Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFH21_RS23185 Genome accession   NZ_CP041754
Coordinates   4875074..4876441 (-) Length   455 a.a.
NCBI ID   WP_002555235.1    Uniprot ID   A0A108WX83
Organism   Pseudomonas sp. KBS0707     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4870074..4881441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH21_RS23165 (FFH21_023165) yjiA 4871026..4872003 (-) 978 WP_011169513.1 GTPase -
  FFH21_RS23170 (FFH21_023170) - 4872099..4872296 (-) 198 WP_002555232.1 YbdD/YjiX family protein -
  FFH21_RS23175 (FFH21_023175) - 4872324..4874399 (-) 2076 WP_002555233.1 carbon starvation CstA family protein -
  FFH21_RS23180 (FFH21_023180) - 4874685..4875059 (+) 375 WP_004655519.1 PilZ domain-containing protein -
  FFH21_RS23185 (FFH21_023185) radA 4875074..4876441 (-) 1368 WP_002555235.1 DNA repair protein RadA Machinery gene
  FFH21_RS23190 (FFH21_023190) mscL 4876636..4877082 (+) 447 WP_002555236.1 large-conductance mechanosensitive channel protein MscL -
  FFH21_RS23205 (FFH21_023205) - 4877500..4878276 (-) 777 WP_004655524.1 ferredoxin--NADP reductase -
  FFH21_RS30685 (FFH21_023210) - 4878613..4878720 (+) 108 Protein_4323 LuxR family transcriptional regulator -
  FFH21_RS23220 (FFH21_023220) - 4878777..4880036 (-) 1260 WP_004663377.1 IS256-like element ISPsy17 family transposase -
  FFH21_RS23225 (FFH21_023225) - 4880092..4880226 (+) 135 Protein_4325 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48913.48 Da        Isoelectric Point: 7.1316

>NTDB_id=373769 FFH21_RS23185 WP_002555235.1 4875074..4876441(-) (radA) [Pseudomonas sp. KBS0707]
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=373769 FFH21_RS23185 WP_002555235.1 4875074..4876441(-) (radA) [Pseudomonas sp. KBS0707]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGCAGCGAATG
CGGTGCCTGGAACACACTGGTCGAAACGATGATTGAGAGTGGCGCTGCTGCGCCGCCCACCGGGCGTACCGGCTGGACCG
GTTCACAGGCGCAAATCAGAACCCTGGCAGAAGTCAGTGTCGAGGAGATTCCGCGCTTCTCCACCAACTCCACCGAGCTC
GACCGAGTGCTGGGCGGCGGGCTGGTTGACGGCTCGGTGGTGCTGATTGGCGGCGACCCCGGCATCGGCAAGTCGACAAT
TCTGTTGCAGACACTGTGCAATATCGCCCAGCGCATGCCCGCGCTGTATGTCACCGGCGAGGAATCCCAGCAGCAGGTGG
CCATGCGTGCCCGACGCCTGGGGCTGCCGCAGGACAAGCTGCGCGTCATGACTGAAACCTGTATCGAAACCATCATTGCC
ACTGCCAAGGTCGAGAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGTTGCAGTCAGCACC
GGGCGGCGTGTCGCAGGTTCGTGAAAGCGCGGCCTTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATCTTTCTGG
TTGGTCACGTCACTAAAGAGGGCGCGCTTGCCGGCCCGCGTGTGCTTGAGCACATGGTCGACACCGTATTGTATTTCGAG
GGCGAGTCGGATGGCCGTCTGCGTCTGCTGCGGGCGGTGAAGAATCGCTTCGGCGCGGTGAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTGCCAGGCA
GTGTGGTCATGGCCACTTGGGAAGGCACGCGGCCGATGCTGGTGGAGGTTCAGGCGCTGGTGGACGACAGCCACATGTCC
AACCCGCGTCGTGTAACGCTGGGTCTGGACCAGAACCGTCTGGCCATGCTCCTGGCGGTCCTGCATCGACATGGCGGTAT
TCCGACTCACGACCAGGACGTGTTTCTCAACGTAGTGGGCGGTGTGAAAGTGCTGGAAACCGCATCCGACCTGGCCTTGA
TGGCTGCGGTGATGTCCAGCCTGCGCAATCGTCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAAGTGGGGTTGTCGGGT
GAGGTCAGGCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCATGGCTTCAAGCGGGCCATCGTACCTAA
AGGCAATGCGCCGAAGGAAGCGCCACCCGGTTTGCAGATCATTGCCGTCACGCGTCTGGAGCAGGCACTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WX83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468

Multiple sequence alignment