Detailed information NTG0373764

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: G6Q95_RS13620
• Genome accession: NZ_CP049348
• Coordinates: 2881955..2882947 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 3R
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2876955..2887947

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6Q95_RS13595	ygbN	2877610..2878974 (+)	1365	WP_000104439.1	GntP family transporter	-
G6Q95_RS13600	-	2879013..2879249 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
G6Q95_RS13605	-	2879260..2880687 (-)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
G6Q95_RS13610	-	2880687..2881280 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
G6Q95_RS13615	-	2881427..2881834 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
G6Q95_RS13620	rpoS	2881955..2882947 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
G6Q95_RS13625	nlpD	2883010..2884104 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
G6Q95_RS13630	pcm	2884289..2884915 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
G6Q95_RS13635	surE	2884909..2885670 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
G6Q95_RS13640	truD	2885651..2886700 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
G6Q95_RS13645	ispF	2886697..2887176 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
G6Q95_RS13650	ispD	2887176..2887886 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=373764 G6Q95_RS13620 WP_000081550.1 2881955..2882947(-) (rpoS) [Escherichia coli strain 3R]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=373764 G6Q95_RS13620 WP_000081550.1 2881955..2882947(-) (rpoS) [Escherichia coli strain 3R]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715