Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G6Q95_RS13325 Genome accession   NZ_CP049348
Coordinates   2826417..2826932 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 3R     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2821417..2831932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Q95_RS13295 ygaZ 2821816..2822553 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  G6Q95_RS13300 ygaH 2822543..2822878 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  G6Q95_RS13310 emrR 2822969..2823499 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G6Q95_RS13315 emrA 2823626..2824798 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G6Q95_RS13320 emrB 2824815..2826353 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G6Q95_RS13325 luxS 2826417..2826932 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  G6Q95_RS13330 gshA 2827082..2828638 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G6Q95_RS13335 yqaA 2828711..2829139 (-) 429 WP_001287454.1 YqaA family protein -
  G6Q95_RS13340 yqaB 2829136..2829702 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G6Q95_RS13370 csrA 2831295..2831480 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=373761 G6Q95_RS13325 WP_001130210.1 2826417..2826932(-) (luxS) [Escherichia coli strain 3R]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=373761 G6Q95_RS13325 WP_001130210.1 2826417..2826932(-) (luxS) [Escherichia coli strain 3R]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737