Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FFH90_RS26690 Genome accession   NZ_CP041753
Coordinates   5798615..5799982 (-) Length   455 a.a.
NCBI ID   WP_064620495.1    Uniprot ID   -
Organism   Pseudomonas sp. ATCC 43928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5793615..5804982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFH90_RS26665 (FFH90_026665) - 5793842..5794531 (+) 690 WP_111454235.1 GntR family transcriptional regulator -
  FFH90_RS26670 (FFH90_026670) yjiA 5794650..5795621 (-) 972 WP_026286390.1 GTPase -
  FFH90_RS26675 (FFH90_026675) - 5795743..5795940 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  FFH90_RS26680 (FFH90_026680) - 5795956..5798022 (-) 2067 WP_064620488.1 carbon starvation CstA family protein -
  FFH90_RS26685 (FFH90_026685) - 5798183..5798551 (+) 369 WP_018925823.1 PilZ domain-containing protein -
  FFH90_RS26690 (FFH90_026690) radA 5798615..5799982 (-) 1368 WP_064620495.1 DNA repair protein RadA Machinery gene
  FFH90_RS26695 (FFH90_026695) - 5800028..5800582 (-) 555 WP_111454233.1 ankyrin repeat domain-containing protein -
  FFH90_RS26700 (FFH90_026700) katB 5800640..5802181 (-) 1542 WP_018925820.1 catalase KatB -
  FFH90_RS26705 (FFH90_026705) mscL 5802467..5802880 (+) 414 WP_111454232.1 large-conductance mechanosensitive channel protein MscL -
  FFH90_RS26710 (FFH90_026710) - 5802925..5803701 (-) 777 WP_111454231.1 ferredoxin--NADP reductase -
  FFH90_RS26715 (FFH90_026715) - 5803994..5804704 (+) 711 WP_138866336.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48801.26 Da        Isoelectric Point: 6.8987

>NTDB_id=373740 FFH90_RS26690 WP_064620495.1 5798615..5799982(-) (radA) [Pseudomonas sp. ATCC 43928]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGAAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=373740 FFH90_RS26690 WP_064620495.1 5798615..5799982(-) (radA) [Pseudomonas sp. ATCC 43928]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCTCAACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGAGCCTGGAACACGCTGACCGAAACCATGGTGGAGAGTGGCGCCGCCGCGGCCCCCAGCGGTCGCACCGGTTGGACCG
GCCAGCAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATTCCGCGTTTTTCCACGGCGTCCAGTGAGCTC
GATCGAGTTTTGGGTGGGGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGTGACCCCGGCATCGGCAAGTCGACGAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAACAAGTGG
CCATGCGTGCCCGGCGGCTGGGCTTGCCTCAGGATCAACTGCGGGTGATGACTGAAACCTGTATTGAAACCATCATTGCC
ACCGCCCGGCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATTCAGACGATCTTCACCGAGCAACTGCAGTCGGCACC
GGGGGGCGTCTCCCAGGTGCGCGAAAGTGCGGCATTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTCG
TGGGCCATGTCACTAAAGAAGGTGCGCTGGCCGGCCCCCGAGTGCTGGAGCACATGGTCGACACCGTTCTGTATTTCGAA
GGCGAATCCGATGGGCGCCTGCGTTTGCTGCGGGCGGTGAAAAACCGGTTCGGCGCGGTGAATGAACTGGGCGTGTTCGG
CATGACCGACAAAGGACTGAAAGAAGTCTCCAACCCTTCGGCGATTTTCCTGACACGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTAGATGACAGCCACCTGGCC
AACCCGCGCCGGGTGACGCTCGGTCTGGATCAGAATCGCCTGGCCATGTTGTTGGCGGTTTTGCACCGCCACGGCGGCAT
CCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGTGTGAAGGTCCTGGAAACCGCTTCTGATCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAACCGGCCGCTGCCGCACGATCTGCTGGTGTTTGGCGAAGTCGGGTTGTCGGGT
GAAGTACGCCCGGTACCGAGTGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCACGGCTTCAAACGCGCCATCGTACCCAA
GGGCAACGCGCCGAAAGAGCCGCCGCCGGGGTTGCAGATTATCGCCGTGACGCGCCTGGAACAGGCCCTCGACGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment