Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6Q95_RS02485 Genome accession   NZ_CP049348
Coordinates   539069..539674 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 3R     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 534069..544674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Q95_RS25960 - 534623..534721 (+) 99 Protein_484 hypothetical protein -
  G6Q95_RS02455 rsmS 534774..534935 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  G6Q95_RS02460 priC 534949..535476 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  G6Q95_RS02465 ybaN 535546..535923 (+) 378 WP_001188905.1 DUF454 family protein -
  G6Q95_RS02470 apt 536076..536627 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G6Q95_RS02475 dnaX 536756..538687 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  G6Q95_RS02480 ybaB 538740..539069 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G6Q95_RS02485 recR 539069..539674 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  G6Q95_RS02490 htpG 539784..541658 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  G6Q95_RS02495 adk 541839..542483 (+) 645 WP_001220233.1 adenylate kinase -
  G6Q95_RS02500 hemH 542719..543681 (+) 963 WP_001250088.1 ferrochelatase -
  G6Q95_RS02505 aes 543678..544637 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=373732 G6Q95_RS02485 WP_001195025.1 539069..539674(+) (recR) [Escherichia coli strain 3R]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=373732 G6Q95_RS02485 WP_001195025.1 539069..539674(+) (recR) [Escherichia coli strain 3R]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443