Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FNZ07_RS24825 Genome accession   NZ_CP041745
Coordinates   2599619..2600995 (-) Length   458 a.a.
NCBI ID   WP_091014757.1    Uniprot ID   -
Organism   Paraburkholderia megapolitana strain LMG 23650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2594619..2605995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ07_RS24805 (FNZ07_24800) - 2595486..2595977 (-) 492 WP_091013912.1 glutathione peroxidase -
  FNZ07_RS24810 (FNZ07_24805) - 2596132..2598063 (+) 1932 WP_091013915.1 ATP-binding cassette domain-containing protein -
  FNZ07_RS24815 (FNZ07_24810) - 2598162..2599196 (+) 1035 WP_091013917.1 CaiB/BaiF CoA-transferase family protein -
  FNZ07_RS24820 (FNZ07_24815) - 2599224..2599487 (-) 264 WP_177228292.1 DUF2866 domain-containing protein -
  FNZ07_RS24825 (FNZ07_24820) radA 2599619..2600995 (-) 1377 WP_091014757.1 DNA repair protein RadA Machinery gene
  FNZ07_RS24830 (FNZ07_24825) alr 2601046..2602116 (-) 1071 WP_091013924.1 alanine racemase -
  FNZ07_RS24835 (FNZ07_24830) lplT 2602336..2603643 (+) 1308 WP_091013927.1 lysophospholipid transporter LplT -
  FNZ07_RS24840 (FNZ07_24835) thiD 2603741..2604547 (+) 807 WP_091013932.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FNZ07_RS24845 (FNZ07_24840) - 2604648..2605715 (-) 1068 WP_407670680.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48820.20 Da        Isoelectric Point: 6.8927

>NTDB_id=373711 FNZ07_RS24825 WP_091014757.1 2599619..2600995(-) (radA) [Paraburkholderia megapolitana strain LMG 23650]
MAKQKTLYTCTECGGQAPKWQGQCPACGAWNTLVEGVAEQASTHRFQSLAKNAPVQRLADIQASDVPRFSTGVGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLAAISNERRALYVSGEESAAQIALRAQRLSLLETDVQASELMLLAEIQLEKIQ
ATIDAERPDVAVIDSIQTIYSDALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGTRPLLVEVQALVDSANA
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSIALIPKANAPKQPIDGLQVIAVERIEQAIDRVRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=373711 FNZ07_RS24825 WP_091014757.1 2599619..2600995(-) (radA) [Paraburkholderia megapolitana strain LMG 23650]
GTGGCTAAACAAAAAACGTTGTACACCTGCACCGAATGCGGCGGGCAGGCACCGAAGTGGCAAGGACAATGTCCCGCGTG
CGGGGCATGGAATACGCTGGTCGAGGGCGTCGCGGAGCAGGCCAGTACGCATCGCTTTCAGTCGCTCGCAAAGAATGCGC
CGGTGCAGCGTCTCGCGGATATCCAGGCATCGGATGTGCCGCGCTTTTCGACCGGTGTCGGCGAGTTCGATCGCGTGCTG
GGTGGCGGGCTCGTGCCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGTAAATCGACATTGCTGCTGCAATC
GCTTGCCGCGATCTCGAACGAACGGCGCGCGCTGTATGTGAGCGGCGAAGAATCGGCGGCGCAGATTGCGCTGCGCGCGC
AGCGACTGTCGCTGCTCGAAACCGACGTGCAGGCGAGCGAACTGATGCTGCTCGCCGAAATCCAGCTCGAAAAAATCCAG
GCGACCATCGATGCCGAACGGCCCGACGTCGCCGTCATCGATTCGATCCAGACCATCTATTCCGATGCGTTGACGTCCGC
GCCGGGCTCAGTTGCGCAGGTGCGCGAATGCGCCGCGCAACTCACGCGTATCGCCAAGCAATCGGGCACGGCCATCATCA
TGGTCGGCCACGTGACGAAAGAGGGCAACCTCGCCGGGCCGCGCGTGCTCGAACACATCGTCGACACCGTGCTGTATTTC
GAAGGCGATACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTGAACGAACTCGGCGTCTT
CGCGATGACCGAGCGCGGCCTGCGCGGCGTCGCCAATCCGTCGGCGCTGTTCCTCTCGCAGCACGAACAGATCGTGCCCG
GCTCGTGCGTGCTCGTGACGCAAGAGGGCACGCGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATTCGGCGAACGCG
CCGAACCCGCGGCGTCTTGCGGTGGGACTCGAACAGAACCGCCTCGCGATGCTGCTCGCTGTACTGCATCGGCACGCCGG
TATTGCGTGCTTCGATCAGGACGTGTTCCTGAATGCGGTAGGCGGCGTGAAGATCACCGAGCCCGCCGCCGACCTCGCGG
TATTGCTCGCAATCCACTCGTCAATGCGTAACAAACCGCTACCGAAGGGCCTCGTCGTTTTCGGCGAAGTCGGGCTCGCG
GGAGAAATCCGGCCGTCGCCGCGCGGTCAGGAGCGCCTGAAGGAAGCGGCGAAGCTCGGCTTCTCGATTGCGCTGATTCC
AAAGGCGAATGCGCCGAAGCAGCCGATCGACGGGCTGCAGGTCATCGCGGTCGAGCGCATCGAGCAGGCCATCGACCGGG
TCCGCACGCTCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.138

100

0.498
  radA Streptococcus pneumoniae Rx1

48.373

100

0.487
  radA Streptococcus pneumoniae D39

48.373

100

0.487
  radA Streptococcus pneumoniae R6

48.373

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.373

100

0.487
  radA Streptococcus mitis SK321

48.578

99.782

0.485
  radA Streptococcus mitis NCTC 12261

48.359

99.782

0.483

Multiple sequence alignment