Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FNZ07_RS15600 Genome accession   NZ_CP041745
Coordinates   485342..486859 (-) Length   505 a.a.
NCBI ID   WP_091009694.1    Uniprot ID   -
Organism   Paraburkholderia megapolitana strain LMG 23650     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 480342..491859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNZ07_RS15575 (FNZ07_15575) - 481307..481939 (-) 633 WP_091009681.1 LON peptidase substrate-binding domain-containing protein -
  FNZ07_RS15580 (FNZ07_15580) rapZ 481978..482871 (-) 894 WP_091009684.1 RNase adapter RapZ -
  FNZ07_RS15585 (FNZ07_15585) hprK 482939..483907 (-) 969 WP_091009686.1 HPr(Ser) kinase/phosphatase -
  FNZ07_RS15590 (FNZ07_15590) ptsN 484045..484500 (-) 456 WP_091009688.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FNZ07_RS15595 (FNZ07_15595) hpf 484815..485174 (-) 360 WP_091009691.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FNZ07_RS15600 (FNZ07_15600) rpoN/rpoN1 485342..486859 (-) 1518 WP_091009694.1 RNA polymerase factor sigma-54 Machinery gene
  FNZ07_RS15605 (FNZ07_15605) lptB 487053..487835 (-) 783 WP_091009698.1 LPS export ABC transporter ATP-binding protein -
  FNZ07_RS15610 (FNZ07_15610) lptA 487832..488521 (-) 690 WP_091009701.1 lipopolysaccharide transport periplasmic protein LptA -
  FNZ07_RS15615 (FNZ07_15615) lptC 488542..489150 (-) 609 WP_091009704.1 LPS export ABC transporter periplasmic protein LptC -
  FNZ07_RS15620 (FNZ07_15620) - 489155..489703 (-) 549 WP_091009706.1 HAD family hydrolase -
  FNZ07_RS15625 (FNZ07_15625) kdsD 489703..490686 (-) 984 WP_091009709.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55784.87 Da        Isoelectric Point: 5.0736

>NTDB_id=373704 FNZ07_RS15600 WP_091009694.1 485342..486859(-) (rpoN/rpoN1) [Paraburkholderia megapolitana strain LMG 23650]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAIAQNPLLENEDDWIASPLRVAADGSLITQTQSTSAPESMN
GPSSSTSSTSSSERSDDGEPRGVDEYNGLSNDSNSDASQWNLDDYGRSGNASDDDDLPPLQIHESSTSLRDHLMAQLRVT
QASPRDRALVTFLIESLDDDGYLTATFEEILTDLPEELEVDVDELNAALALLHSFDPAGVGARSASECLRLQLVRLVATP
IRTLAIDIVAHHLELLAARDFTRLRKQLKANDDDLRDAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELNP
EVVPKLRINHLYANILRNNRSDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFVHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAENPKSPLSDSRIAELLAEQGF
VVARRTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=373704 FNZ07_RS15600 WP_091009694.1 485342..486859(-) (rpoN/rpoN1) [Paraburkholderia megapolitana strain LMG 23650]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCTCAACTGCAACAGTCCATCCGGCTGCTGCA
GCTGTCGACGCTCGAATTGCAGCAGGAGGTGGCAATGGCCATCGCGCAGAATCCGTTGCTCGAGAACGAGGACGACTGGA
TTGCCAGTCCGTTGCGCGTCGCGGCAGATGGTTCGCTGATCACGCAGACGCAGAGCACATCGGCACCGGAATCGATGAAC
GGCCCCTCGTCATCGACCTCGTCCACTTCATCGAGCGAGCGTAGCGACGATGGCGAACCACGCGGCGTCGACGAATACAA
CGGTCTCAGCAACGACAGCAACTCCGACGCAAGCCAGTGGAATCTCGACGATTACGGCCGCTCGGGCAACGCATCCGACG
ACGACGACCTGCCGCCGCTGCAAATCCACGAATCGAGCACTTCGCTGCGCGATCATCTGATGGCGCAGTTGCGCGTTACG
CAGGCAAGTCCACGCGACCGCGCGCTCGTTACGTTCCTCATCGAATCGCTCGACGACGACGGTTATCTGACCGCAACGTT
CGAAGAAATACTGACCGATCTACCCGAAGAACTCGAAGTCGATGTCGACGAACTGAATGCAGCGCTCGCGTTGCTGCACA
GTTTCGATCCCGCCGGAGTCGGTGCAAGGTCGGCATCGGAATGCTTGCGCCTGCAACTAGTTCGACTCGTTGCGACACCG
ATCCGTACACTTGCAATCGATATCGTCGCGCATCACCTGGAGTTGCTGGCCGCACGCGATTTCACGCGGCTGCGCAAGCA
GTTGAAAGCCAACGACGACGACCTGCGCGACGCTCACGCACTGATCCGTTCGCTCGAACCGTTCCCCGGTGCAGCGTATG
GCAAGGCCGAAGCGGATTACGTGGTGCCCGACATCATGGTGCGCAAAACCGCACAAGGATGGCAGGCCGAACTGAATCCT
GAAGTCGTGCCGAAACTGCGTATCAATCATCTGTATGCGAACATCCTGCGCAATAACCGCAGCGATCCTGGCAGCGGTTC
ACTGCGCCAGCAACTGCAGGAAGCACGTTGGCTTATCAAAAATATTCAGCAGCGTTTCGAGACGATCCTGCGGGTTGCGC
AGGCTATTGTCGAACGTCAGAAGAATTTTTTTGTGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCT
GATACGCTGGGGTTACACGAGTCGACGGTTTCGCGTGTAACAACCGGCAAGTACATGCTTACCCCGTTTGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCGCACGTTTCCACCGACACCGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCATCA
AGCAACTGATAGGAGCGGAAAACCCGAAATCTCCTCTTTCAGACAGCCGCATAGCCGAACTGCTGGCAGAGCAGGGTTTC
GTGGTCGCACGGCGTACCGTCGCGAAGTACCGCGAAGCGCTCCGAATTCCAGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-332)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

65.743

100

0.657

Multiple sequence alignment