Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FM734_RS16470 Genome accession   NZ_CP049343
Coordinates   3444976..3445581 (-) Length   201 a.a.
NCBI ID   WP_061157238.1    Uniprot ID   -
Organism   Escherichia coli strain UMB200201_11     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3439976..3450581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM734_RS16450 (FM734_003234) aes 3440117..3441076 (+) 960 WP_000801838.1 acetyl esterase -
  FM734_RS16455 (FM734_003235) hemH 3441073..3442035 (-) 963 WP_001250120.1 ferrochelatase -
  FM734_RS16460 (FM734_003236) adk 3442167..3442811 (-) 645 WP_001345715.1 adenylate kinase -
  FM734_RS16465 (FM734_003237) htpG 3442992..3444866 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  FM734_RS16470 (FM734_003238) recR 3444976..3445581 (-) 606 WP_061157238.1 recombination mediator RecR Machinery gene
  FM734_RS16475 (FM734_003239) ybaB 3445581..3445910 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  FM734_RS16480 (FM734_003240) dnaX 3445963..3447894 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  FM734_RS16485 (FM734_003241) apt 3448023..3448574 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  FM734_RS16490 (FM734_003242) ybaN 3448727..3449104 (-) 378 WP_001188905.1 DUF454 family protein -
  FM734_RS16495 (FM734_003243) priC 3449174..3449701 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  FM734_RS16500 (FM734_003244) rsmS 3449715..3449876 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  FM734_RS22715 - 3449929..3450027 (-) 99 Protein_3263 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21989.08 Da        Isoelectric Point: 4.9097

>NTDB_id=373698 FM734_RS16470 WP_061157238.1 3444976..3445581(-) (recR) [Escherichia coli strain UMB200201_11]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICLNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=373698 FM734_RS16470 WP_061157238.1 3444976..3445581(-) (recR) [Escherichia coli strain UMB200201_11]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTTGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment