Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FM734_RS08365 Genome accession   NZ_CP049343
Coordinates   1771152..1772579 (-) Length   475 a.a.
NCBI ID   WP_000980633.1    Uniprot ID   -
Organism   Escherichia coli strain UMB200201_11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1766152..1777579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM734_RS08335 (FM734_001642) yeeZ 1766207..1767031 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  FM734_RS08340 (FM734_001643) yeeY 1767077..1768006 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FM734_RS08345 yoeI 1768221..1768283 (+) 63 WP_010723108.1 membrane protein YoeI -
  FM734_RS08350 (FM734_001644) plaP 1768273..1769631 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FM734_RS08355 (FM734_001645) tsuA 1769810..1770868 (+) 1059 WP_000492335.1 thiosulfate utilization transporter TsuA/YeeE -
  FM734_RS08360 (FM734_001646) tsuB 1770882..1771109 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FM734_RS08365 (FM734_001647) sbcB 1771152..1772579 (-) 1428 WP_000980633.1 exodeoxyribonuclease I Machinery gene
  FM734_RS08370 (FM734_001648) dacD 1772768..1773934 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FM734_RS08375 (FM734_001649) sbmC 1774053..1774526 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  FM734_RS08380 (FM734_001650) yeeA 1774725..1775783 (+) 1059 WP_001200891.1 FUSC family protein -
  FM734_RS08385 (FM734_001651) tmaR 1775955..1776284 (+) 330 WP_000450409.1 DUF496 family protein -
  FM734_RS08390 - 1776385..1776681 (-) 297 Protein_1649 EutP/PduV family microcompartment system protein -
  FM734_RS08395 (FM734_001652) - 1776660..1777019 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54512.83 Da        Isoelectric Point: 5.6070

>NTDB_id=373678 FM734_RS08365 WP_000980633.1 1771152..1772579(-) (sbcB) [Escherichia coli strain UMB200201_11]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=373678 FM734_RS08365 WP_000980633.1 1771152..1772579(-) (sbcB) [Escherichia coli strain UMB200201_11]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
TGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTATGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment