Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FM734_RS05230 Genome accession   NZ_CP049343
Coordinates   1086283..1086798 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain UMB200201_11     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081283..1091798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FM734_RS05185 (FM734_001026) csrA 1082003..1082188 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FM734_RS05215 (FM734_001032) yqaB 1083513..1084079 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FM734_RS05220 (FM734_001033) yqaA 1084076..1084504 (+) 429 WP_001287457.1 YqaA family protein -
  FM734_RS05225 (FM734_001034) gshA 1084577..1086133 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FM734_RS05230 (FM734_001035) luxS 1086283..1086798 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FM734_RS05235 (FM734_001036) - 1086847..1087959 (-) 1113 WP_000638145.1 ATP-binding protein -
  FM734_RS05240 (FM734_001037) - 1087956..1088663 (-) 708 WP_001097116.1 RNA ligase family protein -
  FM734_RS05245 (FM734_001038) emrB 1088921..1090459 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FM734_RS05250 (FM734_001039) emrA 1090476..1091648 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=373669 FM734_RS05230 WP_001130211.1 1086283..1086798(+) (luxS) [Escherichia coli strain UMB200201_11]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=373669 FM734_RS05230 WP_001130211.1 1086283..1086798(+) (luxS) [Escherichia coli strain UMB200201_11]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731