Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FOA15_RS21865 Genome accession   NZ_CP041731
Coordinates   4881749..4882186 (-) Length   145 a.a.
NCBI ID   WP_179032873.1    Uniprot ID   -
Organism   Paenibacillus kribbensis strain PS04     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4876749..4887186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS21850 - 4877986..4879611 (-) 1626 WP_179032871.1 response regulator -
  FOA15_RS21855 - 4879586..4881406 (-) 1821 WP_179032872.1 sensor histidine kinase -
  FOA15_RS21860 - 4881521..4881727 (+) 207 WP_094154570.1 hypothetical protein -
  FOA15_RS21865 nucA/comI 4881749..4882186 (-) 438 WP_179032873.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FOA15_RS21870 - 4882326..4882520 (+) 195 WP_007431080.1 hypothetical protein -
  FOA15_RS21875 - 4882904..4883206 (+) 303 WP_007431081.1 hypothetical protein -
  FOA15_RS21880 - 4883276..4885153 (-) 1878 WP_179032874.1 Ig-like domain-containing protein -
  FOA15_RS21885 - 4885273..4885695 (-) 423 WP_007431083.1 hypothetical protein -
  FOA15_RS21890 - 4885712..4886380 (-) 669 WP_179032875.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16153.42 Da        Isoelectric Point: 9.3588

>NTDB_id=373635 FOA15_RS21865 WP_179032873.1 4881749..4882186(-) (nucA/comI) [Paenibacillus kribbensis strain PS04]
MKKKLLSFITVVLLAAGMYWFKGVDLLTKTPQENPPSSVQVTLHFPSDRYPETAQHIKEAIQTGKSSVCTIDREGAEQNR
KHSLAGVPARKGYDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=373635 FOA15_RS21865 WP_179032873.1 4881749..4882186(-) (nucA/comI) [Paenibacillus kribbensis strain PS04]
TTGAAGAAAAAACTGTTAAGTTTTATAACCGTAGTGCTATTGGCCGCGGGTATGTATTGGTTTAAAGGAGTCGATCTCCT
TACGAAAACACCACAAGAGAACCCGCCCTCATCGGTACAGGTTACACTGCATTTTCCGTCGGATCGGTATCCAGAAACGG
CGCAGCATATCAAGGAAGCGATTCAGACGGGAAAATCATCGGTATGCACAATTGATCGTGAAGGAGCCGAGCAAAATCGC
AAGCATTCGCTTGCAGGAGTTCCCGCTCGTAAAGGATACGATCGTGACGAATGGCCGATGGCGATGTGCTCAGAAGGCGG
CAAAGGTGCTAATGTCAAATACATAGCTCCTAAGGATAATCGTGGGGCAGGATCATGGGTAAGTCACCAATTGGATGAGT
ATGAGGATGGAACTCGTGTAAAATTTGTCGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.269

71.724

0.49

Multiple sequence alignment