Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOA15_RS09345 Genome accession   NZ_CP041731
Coordinates   2060484..2062334 (+) Length   616 a.a.
NCBI ID   WP_179031497.1    Uniprot ID   -
Organism   Paenibacillus kribbensis strain PS04     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2055484..2067334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS09320 - 2056085..2056915 (+) 831 WP_256873792.1 Nif3-like dinuclear metal center hexameric protein -
  FOA15_RS09325 - 2056959..2057762 (+) 804 WP_179031495.1 alpha/beta hydrolase family protein -
  FOA15_RS09330 - 2057980..2058132 (-) 153 WP_157739766.1 hypothetical protein -
  FOA15_RS09335 - 2058274..2058681 (+) 408 WP_007428744.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOA15_RS09340 rcrP 2058728..2060491 (+) 1764 WP_179031496.1 ABC transporter ATP-binding protein Regulator
  FOA15_RS09345 rcrQ 2060484..2062334 (+) 1851 WP_179031497.1 ABC transporter ATP-binding protein Regulator
  FOA15_RS09350 - 2062973..2064472 (+) 1500 WP_179031498.1 glycoside hydrolase family 68 protein -
  FOA15_RS09355 - 2064578..2066134 (+) 1557 WP_179031499.1 glycoside hydrolase family 32 protein -
  FOA15_RS09360 - 2066259..2066723 (-) 465 WP_007428749.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67661.34 Da        Isoelectric Point: 6.7419

>NTDB_id=373624 FOA15_RS09345 WP_179031497.1 2060484..2062334(+) (rcrQ) [Paenibacillus kribbensis strain PS04]
MDKNEHTVDSKHMKMKQQGPMGGGPAGGMGAGEKANNFKKTISQLLSYGKAYVPMIILSMVLALVGSAFNVIGPGKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLVLLYGFGLIFNYFQGFITVTVSQRLTKKMRTEMSRKINHMPLKYFDTTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGILATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVGGALLVNQHAITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTKKLDNAKGDVEFKHVRFGYNEDRMIIKDFSMKA
EAGQKIAIVGPTGSGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRANIHELFCMVLQDTWLFEGTIRDNIVFSKEHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLAKGGFYADLYNSQFEQAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=373624 FOA15_RS09345 WP_179031497.1 2060484..2062334(+) (rcrQ) [Paenibacillus kribbensis strain PS04]
ATGGATAAGAATGAACACACCGTCGACAGCAAGCATATGAAGATGAAACAGCAAGGTCCCATGGGTGGAGGTCCTGCGGG
AGGCATGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACGATCAGCCAGCTCTTATCCTACGGCAAGGCCTATGTGC
CCATGATTATTCTCTCTATGGTGCTGGCCCTGGTCGGTTCCGCCTTCAACGTGATTGGTCCGGGTAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAGTGCTGTCCAGAAGATTGTTCTTGTATTGGTGCTTTT
GTATGGTTTTGGTCTTATCTTTAATTATTTCCAAGGTTTTATTACGGTAACCGTATCACAGCGTCTTACAAAGAAAATGC
GGACAGAGATGTCCCGAAAAATCAATCATATGCCTCTAAAGTATTTTGATACTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACCAATGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTTGGTACGCTTGTCAGCGCGCTGGCAACCTTCGT
GGGCGCATTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGGATTCTAGCTACGCTGATCGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
CGGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGCCTGATGATGCCAGTTATGATGTTCATCGGGAATT
TCGGTTATGTCGCGGTCTGTGTCGGAGGCGCTTTGCTGGTGAACCAACATGCGATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCACAGTTGGCACAGGCCGCAACCAATCTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTTGAATTTCTGGGTGAAGAAGAATTGGCGGATGAGAGCGACAAGACCAAGAAGCTGGACAACGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGTTATAACGAAGACCGTATGATTATCAAAGACTTCTCCATGAAAGCT
GAAGCTGGGCAGAAAATTGCCATTGTTGGTCCGACAGGCTCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAATGGCGGGGAAATCTATATTGACGGAACCCCCATCAGCCAATTAACACGTGCGAATATTCATGAATTATTCT
GTATGGTGCTGCAGGATACCTGGCTGTTTGAAGGAACGATCCGTGACAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTGGAAGCCGCATGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACCCTGCCGCAGGGCTATGATACGGTGCT
GGACGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TCATTCTGGACGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCGGCTTACTGTA
GGGAAAACCTCCTTTGTGATTGCCCACCGCCTCTCGACGATCAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGCAA
CATTATCGAAACGGGCAACCATGAGGAATTGCTGGCCAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
AAGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.786

93.994

0.524

Multiple sequence alignment