Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOA15_RS09340 Genome accession   NZ_CP041731
Coordinates   2058728..2060491 (+) Length   587 a.a.
NCBI ID   WP_179031496.1    Uniprot ID   -
Organism   Paenibacillus kribbensis strain PS04     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2053728..2065491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS09315 - 2054646..2055974 (+) 1329 WP_179031494.1 MFS transporter -
  FOA15_RS09320 - 2056085..2056915 (+) 831 WP_256873792.1 Nif3-like dinuclear metal center hexameric protein -
  FOA15_RS09325 - 2056959..2057762 (+) 804 WP_179031495.1 alpha/beta hydrolase family protein -
  FOA15_RS09330 - 2057980..2058132 (-) 153 WP_157739766.1 hypothetical protein -
  FOA15_RS09335 - 2058274..2058681 (+) 408 WP_007428744.1 MarR family winged helix-turn-helix transcriptional regulator -
  FOA15_RS09340 rcrP 2058728..2060491 (+) 1764 WP_179031496.1 ABC transporter ATP-binding protein Regulator
  FOA15_RS09345 rcrQ 2060484..2062334 (+) 1851 WP_179031497.1 ABC transporter ATP-binding protein Regulator
  FOA15_RS09350 - 2062973..2064472 (+) 1500 WP_179031498.1 glycoside hydrolase family 68 protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64907.27 Da        Isoelectric Point: 7.3925

>NTDB_id=373623 FOA15_RS09340 WP_179031496.1 2058728..2060491(+) (rcrP) [Paenibacillus kribbensis strain PS04]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPVSELLIPGSYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIMKIADKNWQWTAS
TGAAVAVLILMLSVIIIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADEYQEEKFGQANVELMNTNLFANRLMTM
VGPGMTFIMSGLSVAIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIVDGHETAGEEGVMGQVEFRNVSFKYPDTEEPVLRNISFTAQRGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQALHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKAAVGIAQSTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETDHATTLIVAQRIGTIKDADRIIVLDQGEVVGNGT
HEELMANCSTYQEIAYSQLSKEELVHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=373623 FOA15_RS09340 WP_179031496.1 2058728..2060491(+) (rcrP) [Paenibacillus kribbensis strain PS04]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGTTATGCAGCCTGGCCTTCATCGTTGTGCAGGT
GTGGCTTGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACAGCAGGAACACCGGTGTCGGAAC
TGCTGATTCCCGGTAGTTACATGCTGTTGTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTTGCGGCAGGGCTGGCCATGCGTCTGCGCGCGATGGTCTTTGACAAGACCTTATCATTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTCATCACCCGCTCCACAAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTATGAAGATTGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGGGCGGCCGTGGCTGTCCTGATCTTGATGCTGAGTGTCATTATTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGACTTCGGGTGGTACGCGCTTATAATGCAGATG
AGTATCAGGAGGAGAAGTTCGGGCAAGCCAATGTTGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGTATGACCTTTATTATGTCGGGTCTGAGTGTCGCTATCTATTGGATTGGCGCTTACCTGATTAACGGAGC
GGCCGTACCGGACCGCATTACGTTGTTCTCTAATATGGTCGTATTCTCCTCTTATGCGATGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATCTTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCGTTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCAGATACGGAGGAGCCCGTGCTTCGCAACATTAGCTTTACGGCACAACGGGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTTCCCGTTTCTACGATGTGACCGAGGGAGAGGTGCTCGTGGAT
GGTGTGAATGTCAGAAACTATAAGCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCGCAGAGAGCCGTGCTTTTCAG
CGGTACGGTGGCATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAGCAGCCGTAG
GGATTGCCCAAAGCACGGAATTTGTTGAAAAAATGGATGGTCAGTACCAGGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTTGATGATTCCTT
CTCGGCACTGGACTACAGAACAGACCGGATTCTGCGTTCCGCTCTCAAAAAAGAAACCGACCATGCGACGACACTCATTG
TTGCTCAGCGCATAGGCACTATTAAGGACGCTGACCGGATTATCGTACTGGATCAGGGTGAGGTTGTAGGGAACGGCACA
CATGAAGAGCTGATGGCGAACTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTTGTACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment