Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOA15_RS02760 Genome accession   NZ_CP041731
Coordinates   546936..548309 (-) Length   457 a.a.
NCBI ID   WP_007432610.1    Uniprot ID   A0A222WI67
Organism   Paenibacillus kribbensis strain PS04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541936..553309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOA15_RS02735 ispF 542528..543004 (-) 477 WP_025715695.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FOA15_RS02740 ispD 543001..543699 (-) 699 WP_007432606.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FOA15_RS02745 - 543770..544855 (-) 1086 WP_094153684.1 PIN/TRAM domain-containing protein -
  FOA15_RS02750 pssA 545046..545792 (-) 747 WP_007432608.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  FOA15_RS02755 disA 545847..546923 (-) 1077 WP_179030762.1 DNA integrity scanning diadenylate cyclase DisA -
  FOA15_RS02760 radA 546936..548309 (-) 1374 WP_007432610.1 DNA repair protein RadA Machinery gene
  FOA15_RS02765 clpC 548551..550995 (-) 2445 WP_007432611.1 ATP-dependent protease ATP-binding subunit ClpC -
  FOA15_RS02770 - 551040..552104 (-) 1065 WP_007432612.1 protein arginine kinase -
  FOA15_RS02775 - 552134..552658 (-) 525 WP_179030763.1 UvrB/UvrC motif-containing protein -
  FOA15_RS02780 - 552743..553207 (-) 465 WP_007432614.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49235.94 Da        Isoelectric Point: 6.7620

>NTDB_id=373610 FOA15_RS02760 WP_007432610.1 546936..548309(-) (radA) [Paenibacillus kribbensis strain PS04]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESIVKTQGMGSSLLTHSTKDKPLPIIEVESGKEARILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASVEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVATVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=373610 FOA15_RS02760 WP_007432610.1 546936..548309(-) (radA) [Paenibacillus kribbensis strain PS04]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACCGAATGCGGGTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTGGAAGAAACGGAAAGCATTGTAAAAACTCAAGGAATGGGTTCTTCCCTTCTTACTCATA
GCACAAAAGATAAGCCGCTCCCTATTATCGAGGTAGAGAGTGGCAAAGAAGCACGAATTTTGACGGGAATTGGCGAATTG
AATCGTGTGCTAGGCGGAGGCGTAGTGCCAGGGTCCCTCGTTCTGGTGGGCGGTGATCCGGGAATTGGCAAGTCTACGCT
TATGCTACAAACATCTAATGAGCTCGCTTTAACCGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAGTCGGTTCGTCAAA
CGAAGCTGCGTGCAGACCGTCTGGGTGCCTTATCTCCCAATTTATACGTATTATGCGAAACAAATTTGGAGACGATTGAA
GAAGCAGTGGACAGCTTGAAGCCTGAGTTTTTGGTAATCGACTCTATTCAGACCGTATATTTGCCTGAGGTGACAAGTGC
GCCGGGGAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGACTAGGTATTGCTACGGTAC
TGGTAGGACATGTGACCAAAGAAGGGGCAATTGCAGGCCCGCGTCTGTTGGAGCATATGGTCGATTGCGTGCTTTATTTT
GAAGGAGAGCGTCATCACACGTATCGGCTGCTGCGTGCAGTTAAGAACCGTTTCGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCTGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAGCTTTTCCTGTCCGAACGACCACTGGGGGTGGCTG
GTTCCACTGTCGTAGCCAGTGTGGAAGGAACCCGACCTGTGCTGGTTGAGCTGCAGGCACTGATTGCAGCCACACATTTT
CCTTCTCCACGCCGAATGGGTACAGGAATCGACCATCATCGGATGGGATTAATCATCGCTGTGCTGGAAAAGCGAATGGG
TATGTTTTTGCAAAATCAGGATGCTTATCTCAATGTAGCCGGAGGTGTAAAGCTGGATGAGCCTGCGGTGGATTTGGCTA
TAGCGGTGAGCATCGCTTCCAGCTTTCGGGATGCCCCTACCAAGCCGTACGATGTGATTTTTGGCGAAGTAGGGCTGACA
GGCGAGGTGCGAGCTGTATCCCGAGCAGAGCAGCGAGTGCGGGAAGCGGAAAAGCTGGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGCAACGGTGGCAGATGCATTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222WI67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.674
  radA Streptococcus mitis NCTC 12261

58.628

98.906

0.58
  radA Streptococcus pneumoniae Rx1

58.628

98.906

0.58
  radA Streptococcus pneumoniae D39

58.628

98.906

0.58
  radA Streptococcus pneumoniae R6

58.628

98.906

0.58
  radA Streptococcus pneumoniae TIGR4

58.628

98.906

0.58
  radA Streptococcus mitis SK321

58.407

98.906

0.578

Multiple sequence alignment