Detailed information NTG0373604

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: FNU76_RS14955
• Genome accession: NZ_CP041730
• Coordinates: 3317872..3319050 (-)
• Length: 392 a.a.
• NCBI ID: WP_223879035.1
• Uniprot ID: -
• Organism: Chitinimonas arctica strain R3-44
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3312872..3324050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNU76_RS14930 (FNU76_14930)	-	3314086..3314526 (+)	441	WP_179958128.1	BON domain-containing protein	-
FNU76_RS14935 (FNU76_14935)	-	3314770..3315024 (+)	255	WP_144278937.1	hypothetical protein	-
FNU76_RS14940 (FNU76_14940)	-	3315076..3315648 (+)	573	WP_144278938.1	bacterioferritin	-
FNU76_RS14945 (FNU76_14945)	-	3315694..3315891 (+)	198	WP_144278939.1	hypothetical protein	-
FNU76_RS14950 (FNU76_14950)	-	3315966..3317879 (-)	1914	WP_144278940.1	AsmA family protein	-
FNU76_RS14955 (FNU76_14955)	rpoN/rpoN1	3317872..3319050 (-)	1179	WP_223879035.1	RNA polymerase factor sigma-54	Machinery gene
FNU76_RS24905	-	3319125..3319274 (+)	150	WP_263405664.1	hypothetical protein	-
FNU76_RS25240	-	3319245..3319331 (-)	87	Protein_2948	hypothetical protein	-
FNU76_RS14960 (FNU76_14960)	-	3319538..3319795 (-)	258	WP_144278941.1	hypothetical protein	-
FNU76_RS14965 (FNU76_14965)	-	3319995..3320312 (+)	318	WP_144278942.1	BON domain-containing protein	-
FNU76_RS14970 (FNU76_14970)	-	3320319..3323108 (-)	2790	WP_144278943.1	PAS domain-containing protein	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 43892.19 Da
• Isoelectric Point: 6.9654

>NTDB_id=373604 FNU76_RS14955 WP_223879035.1 3317872..3319050(-) (rpoN/rpoN1) [Chitinimonas arctica strain R3-44]
MGCLGRPGWDNWGQGKRSGYDGELDLLDLAEADVRLHEYLHRQLNTRQLSERDHLLASLVVEALDDDGYLRMAMDEIGEM
AELTPPPDECELGMALKLVQSFEPAGVGARDVRECLLLQLENLPPQADAVLISAIVGEHLNQLAQRDIKGIAKALGRTPA
EIEQACEHIRHLEARPGWQHDSRTVAYITPDVIVRKQRGLWTATLNPAVVPRVRLNQVYAELFQSHRESHHGDMASHLQE
ARWTVRNVEQRFATILRVSEAIVERQKNFFEYGPLAMKPLGLKEIAEVVGLHESTVSRVTNNKYMATPAGVFELKYFFSR
ALATTRGGACSATAIRSTIKDMIAAETGNAPVSDAEIARLLGRQGLQVARRTVTKYRQMMRIPAVEMRRQHA

Nucleotide

• Length: 1179 bp

>NTDB_id=373604 FNU76_RS14955 WP_223879035.1 3317872..3319050(-) (rpoN/rpoN1) [Chitinimonas arctica strain R3-44]
ATGGGATGCCTCGGAAGGCCCGGCTGGGACAATTGGGGCCAGGGCAAGCGTAGCGGCTACGACGGCGAGCTCGATCTATT
GGATCTGGCCGAAGCGGATGTCCGCCTGCATGAGTATCTGCATCGGCAGCTCAATACACGCCAGTTGTCCGAACGCGACC
ACCTGCTCGCCAGCCTGGTGGTGGAAGCGCTGGATGACGACGGCTATCTACGCATGGCGATGGATGAAATCGGCGAGATG
GCCGAATTGACTCCCCCGCCCGATGAATGCGAGCTGGGCATGGCACTCAAGCTGGTGCAGTCCTTCGAACCGGCTGGCGT
GGGCGCCCGCGATGTGCGCGAATGCCTGTTGCTGCAATTGGAAAATCTCCCGCCCCAGGCCGACGCCGTACTGATCTCGG
CTATCGTCGGCGAGCATTTGAATCAGCTGGCCCAGCGCGATATCAAGGGAATAGCCAAGGCGCTGGGCCGCACACCCGCC
GAAATCGAACAGGCCTGCGAGCATATCCGGCATCTGGAGGCACGGCCCGGCTGGCAGCATGACAGTCGCACGGTGGCCTA
TATCACCCCCGACGTGATCGTCCGCAAGCAACGCGGCCTCTGGACCGCGACGCTGAACCCGGCCGTGGTGCCACGGGTGC
GGCTCAACCAGGTCTATGCCGAACTGTTCCAAAGCCACCGCGAATCGCATCACGGCGATATGGCCTCGCACCTGCAGGAA
GCGCGTTGGACGGTACGCAATGTCGAACAACGGTTTGCCACCATCCTGCGCGTCAGCGAGGCGATCGTCGAGCGGCAGAA
GAACTTCTTCGAATATGGCCCCTTGGCGATGAAACCGCTGGGGCTGAAGGAAATCGCCGAAGTGGTTGGCCTGCATGAAT
CGACGGTATCGCGGGTGACCAACAATAAATACATGGCCACGCCGGCGGGCGTGTTCGAACTGAAGTATTTCTTCTCGCGC
GCGCTGGCCACCACCCGTGGCGGCGCCTGCTCGGCCACCGCCATCCGCAGCACCATCAAGGACATGATCGCGGCCGAAAC
CGGCAATGCGCCGGTCTCGGATGCCGAGATCGCCCGTTTGCTGGGCCGCCAGGGTTTGCAGGTGGCGCGTCGGACCGTCA
CCAAATATCGCCAGATGATGCGGATTCCAGCCGTGGAAATGCGACGCCAGCATGCCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (235-390)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (29-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.214	100	0.482