Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SARLGA251_RS06440 Genome accession   NC_017349
Coordinates   1307695..1308846 (+) Length   383 a.a.
NCBI ID   WP_000020352.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus LGA251     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1302695..1313846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARLGA251_RS06415 (SARLGA251_11900) yfmH 1303524..1304810 (+) 1287 WP_000664773.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SARLGA251_RS06420 (SARLGA251_11910) ymfI 1304810..1305514 (+) 705 WP_000646221.1 elongation factor P 5-aminopentanone reductase -
  SARLGA251_RS06425 (SARLGA251_11920) - 1305619..1306446 (+) 828 WP_000214890.1 YmfK family protein -
  SARLGA251_RS06430 (SARLGA251_11930) - 1306465..1306857 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  SARLGA251_RS06435 (SARLGA251_11940) pgsA 1306891..1307469 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SARLGA251_RS06440 (SARLGA251_11950) cinA 1307695..1308846 (+) 1152 WP_000020352.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SARLGA251_RS06445 (SARLGA251_11960) recA 1309011..1310054 (+) 1044 WP_000368170.1 recombinase RecA Machinery gene
  SARLGA251_RS06450 (SARLGA251_11970) rny 1310409..1311968 (+) 1560 WP_001050913.1 ribonuclease Y -
  SARLGA251_RS06455 (SARLGA251_11980) - 1312265..1312480 (-) 216 WP_000026308.1 hypothetical protein -
  SARLGA251_RS06460 (SARLGA251_11990) - 1312654..1313451 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43203.55 Da        Isoelectric Point: 6.3213

>NTDB_id=37358 SARLGA251_RS06440 WP_000020352.1 1307695..1308846(+) (cinA) [Staphylococcus aureus subsp. aureus LGA251]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNEKFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=37358 SARLGA251_RS06440 WP_000020352.1 1307695..1308846(+) (cinA) [Staphylococcus aureus subsp. aureus LGA251]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCGTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAAATTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment