Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GC56T3_RS14140 Genome accession   NC_014206
Coordinates   2864408..2866231 (-) Length   607 a.a.
NCBI ID   WP_013146067.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2859408..2871231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS14105 (GC56T3_2715) - 2859875..2860513 (-) 639 WP_011230330.1 GTP pyrophosphokinase family protein -
  GC56T3_RS14110 (GC56T3_2716) - 2860649..2861020 (-) 372 WP_013146064.1 hypothetical protein -
  GC56T3_RS14115 (GC56T3_2717) - 2861156..2861749 (+) 594 WP_011230328.1 CYTH domain-containing protein -
  GC56T3_RS14120 (GC56T3_2718) - 2861746..2862369 (+) 624 WP_013146065.1 lytic transglycosylase domain-containing protein -
  GC56T3_RS14125 (GC56T3_2719) - 2862472..2862885 (+) 414 WP_011230326.1 hypothetical protein -
  GC56T3_RS14130 (GC56T3_2720) spxH 2862878..2863771 (+) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  GC56T3_RS14135 (GC56T3_2721) - 2864197..2864394 (+) 198 WP_013146066.1 hypothetical protein -
  GC56T3_RS14140 (GC56T3_2722) pepF 2864408..2866231 (-) 1824 WP_013146067.1 oligoendopeptidase F Regulator
  GC56T3_RS14145 (GC56T3_2723) - 2866231..2867559 (-) 1329 WP_013146068.1 competence protein CoiA -
  GC56T3_RS14150 (GC56T3_2724) cls 2867742..2869250 (-) 1509 WP_011230321.1 cardiolipin synthase -
  GC56T3_RS14155 (GC56T3_2725) mecA 2869347..2870027 (-) 681 WP_013146069.1 adaptor protein MecA -
  GC56T3_RS14160 (GC56T3_2726) - 2870238..2870897 (+) 660 WP_013146070.1 TerC family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70301.41 Da        Isoelectric Point: 5.0421

>NTDB_id=37357 GC56T3_RS14140 WP_013146067.1 2864408..2866231(-) (pepF) [Geobacillus sp. C56-T3]
MTVEEKKAKKSLPLRSEIPVEETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALQCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSNTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQEV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=37357 GC56T3_RS14140 WP_013146067.1 2864408..2866231(-) (pepF) [Geobacillus sp. C56-T3]
ATGACGGTGGAGGAAAAGAAAGCGAAAAAGTCGCTGCCGCTGCGAAGCGAGATTCCGGTGGAAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCAATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGCTGTATGAAGCATTGCAATGCCAAGATGACGTATCAATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAACTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAAATTACGCGCCAGCGCCCGCACGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCAGCCGAGGTGATGCAGGCGACATCCAATACGTTCAGCGCGCTGAACAACGC
TGATTTGACGTTTCCGACGATCATCGATGAAAACGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGCTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGTATCCGCCGCTACCGTTCGGCGCGGGAAGCGGCGTT
GGATGCGAACAACATTCCGGAGAGCGTCTATGACAACCTAATTGCTACGATTCATGAACATTTGCCATTGCTGCACCGGT
ATGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGATTTGTACACGCCGCTTGTGCAAGAAGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCGACGTGCAATGAGGCGCTGTTGAACGACTATTTGCTGAAAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAGGCATTGACGGCCGAGACGTTGACGTCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTATGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTTAGCAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTAAAAGCCGGCAGCTCTGATTACCCGATTGAAGTATTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(122-191)

Peptidase family M3 (Peptidase_M3)

(213-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

97.694

0.501

Multiple sequence alignment