Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   FO458_RS12345 Genome accession   NZ_CP041726
Coordinates   2523822..2524487 (+) Length   221 a.a.
NCBI ID   WP_070647759.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain SL118     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518822..2529487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FO458_RS12325 (FO458_12330) - 2519196..2520467 (+) 1272 WP_002478509.1 nucleotide sugar dehydrogenase -
  FO458_RS12330 (FO458_12335) wecB 2520510..2521649 (+) 1140 WP_002478510.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  FO458_RS12335 (FO458_12340) - 2521835..2523283 (-) 1449 WP_070815487.1 alkaline phosphatase -
  FO458_RS12915 - 2523502..2523606 (+) 105 Protein_2390 hypothetical protein -
  FO458_RS12345 (FO458_12350) braR 2523822..2524487 (+) 666 WP_070647759.1 response regulator transcription factor Regulator
  FO458_RS12350 (FO458_12355) braS 2524493..2525401 (+) 909 WP_037545648.1 sensor histidine kinase Regulator
  FO458_RS12355 (FO458_12360) - 2525507..2526256 (+) 750 WP_002478514.1 ABC transporter ATP-binding protein -
  FO458_RS12360 (FO458_12365) - 2526240..2528240 (+) 2001 WP_080606488.1 FtsX-like permease family protein -
  FO458_RS12365 (FO458_12370) - 2528283..2528732 (+) 450 WP_002492528.1 hypothetical protein -
  FO458_RS12370 (FO458_12375) - 2528819..2529298 (+) 480 WP_070647761.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25810.79 Da        Isoelectric Point: 4.8725

>NTDB_id=373535 FO458_RS12345 WP_070647759.1 2523822..2524487(+) (braR) [Staphylococcus lugdunensis strain SL118]
MRIMIVEDDVVIRESLAGELMKWNYDVVAVDTFDDIVSWFVKYEPDLVLLDINLPTLNGFHWCQEIRKSSNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVTKIQALLRRTYNLTVNHNETTVRDCKLIIDEAKLYYKEESVHLSFTELQIIK
MLFDNQGKYVSRTALIEKCWESEHFIDDNTLAVNMTRLRKKLNSIGLEDFIETKKNIGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=373535 FO458_RS12345 WP_070647759.1 2523822..2524487(+) (braR) [Staphylococcus lugdunensis strain SL118]
ATGAGGATTATGATTGTTGAGGATGATGTTGTGATTCGCGAGAGTTTGGCTGGTGAACTGATGAAGTGGAATTATGATGT
GGTTGCTGTAGATACCTTTGATGATATTGTGTCTTGGTTCGTAAAGTATGAACCAGATTTAGTGTTGTTGGACATTAATT
TACCTACATTGAATGGATTTCACTGGTGCCAAGAAATTCGCAAATCGTCAAATGTACCAATTATTTTTATTAGCTCACGC
ACGGATAATATGGATCAGATTATGGCGATACAAATGGGTGGAGATGACTTTATAGAAAAACCATTTAATCTGTCATTGAC
CGTAACAAAGATTCAAGCTTTGCTTCGTCGAACTTATAATTTAACTGTGAATCATAATGAAACGACAGTTCGTGACTGTA
AGTTGATTATTGATGAAGCAAAGCTTTATTACAAAGAAGAATCGGTACATTTATCATTTACAGAGTTACAAATTATTAAA
ATGCTGTTTGATAATCAAGGTAAATATGTCAGTCGCACAGCGTTAATTGAAAAATGCTGGGAGTCTGAACACTTTATTGA
TGACAATACGCTTGCGGTAAATATGACACGCTTACGCAAAAAACTTAATTCTATAGGGCTTGAAGATTTTATTGAAACAA
AAAAGAATATAGGATATAAGGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

76.471

100

0.765

Multiple sequence alignment