Detailed information NTG0373520

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: G6536_RS04935
• Genome accession: NZ_CP049330
• Coordinates: 973902..975020 (+)
• Length: 372 a.a.
• NCBI ID: WP_003179978.1
• Uniprot ID: Q65M68
• Organism: Bacillus licheniformis strain CP6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 968902..980020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6536_RS04910 (G6536_04990)	-	969327..969542 (+)	216	WP_003179974.1	hypothetical protein	-
G6536_RS22275	-	969707..969841 (+)	135	Protein_922	N-acetylmuramoyl-L-alanine amidase	-
G6536_RS04920 (G6536_05000)	-	969915..971345 (-)	1431	WP_016886315.1	IS1182 family transposase	-
G6536_RS04925 (G6536_05005)	-	971488..971826 (-)	339	WP_009329009.1	hypothetical protein	-
G6536_RS04930 (G6536_05010)	-	971852..973576 (-)	1725	WP_003179977.1	T7SS effector LXG polymorphic toxin	-
G6536_RS04935 (G6536_05015)	rapC	973902..975020 (+)	1119	WP_003179978.1	Rap family tetratricopeptide repeat protein	Regulator
G6536_RS22280	-	975813..976010 (+)	198	Protein_927	TGS domain-containing protein	-
G6536_RS04940 (G6536_05020)	-	976013..977131 (+)	1119	WP_231082812.1	DUF418 domain-containing protein	-
G6536_RS04945 (G6536_05025)	-	977378..977596 (+)	219	WP_003179982.1	hypothetical protein	-
G6536_RS04950 (G6536_05030)	aroD	977984..978748 (+)	765	WP_003179983.1	type I 3-dehydroquinate dehydratase	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 43946.57 Da
• Isoelectric Point: 6.5966

>NTDB_id=373520 G6536_RS04935 WP_003179978.1 973902..975020(+) (rapC) [Bacillus licheniformis strain CP6]
METIPSSEVGIKINRWYNEIQKLNVIEAERLKAEVHLAIERMEEDQDLLSYYQLMNFRHELMLEYLFPAEKKLSKSDYLR
EIEGQGRKLSGLLEYYFSFFTGMYHFSRGKYIKAIKAYRAAEKKLTKVSDKIEKAEFYYKMAEVFYHMKQTHMSMYYVSL
AYDIYKSYDAYVIRRINCLFVVAGNYIDLSTHDQALPHLLSAKESAEDIQNKAIVAKALLNVAYCYNAMERPTKAIEYFH
KAIDVAKEIKAKELTQAYYDLALIHFRNNENIEGRKFYEKALESARVFEDELFLCLLDVLEALFIKSANKSEVLETMKPL
RDSRGYPYLEELALEAALFYTRNERPNDSIFFYDQMVQAQKQIKRGDFLYEI

Nucleotide

• Length: 1119 bp

>NTDB_id=373520 G6536_RS04935 WP_003179978.1 973902..975020(+) (rapC) [Bacillus licheniformis strain CP6]
TTGGAGACTATCCCGTCTTCAGAAGTTGGAATCAAAATAAACCGCTGGTACAACGAAATTCAAAAATTAAACGTAATAGA
AGCAGAACGATTAAAGGCGGAAGTTCACTTAGCTATAGAAAGAATGGAAGAAGATCAGGACTTGCTTTCCTATTATCAGC
TTATGAATTTTAGACATGAGTTAATGTTGGAATATCTTTTCCCGGCAGAAAAAAAGCTGAGCAAATCTGATTATCTTAGG
GAAATTGAGGGACAGGGAAGAAAATTGTCAGGCTTGCTCGAATACTATTTTTCCTTTTTCACCGGAATGTATCATTTTTC
TCGCGGAAAATACATAAAGGCAATCAAGGCATATAGAGCAGCAGAAAAAAAGTTGACGAAAGTTTCAGATAAAATAGAAA
AGGCTGAATTCTATTATAAGATGGCGGAAGTGTTTTATCATATGAAACAGACTCATATGTCAATGTATTATGTGTCTCTC
GCTTATGATATTTATAAATCCTATGATGCATATGTGATTCGAAGAATTAATTGTCTATTCGTTGTTGCTGGGAATTACAT
TGATTTATCAACCCATGATCAAGCTTTACCGCATCTTTTAAGCGCTAAGGAATCCGCGGAAGACATTCAAAACAAGGCGA
TCGTTGCAAAGGCTCTTTTAAATGTAGCATATTGTTATAATGCAATGGAGAGACCAACAAAAGCTATTGAATACTTTCAT
AAGGCGATTGATGTAGCAAAGGAAATAAAGGCAAAAGAACTGACTCAGGCTTATTATGATTTGGCATTAATTCACTTTCG
AAATAACGAAAATATTGAAGGACGAAAATTTTATGAAAAGGCGCTTGAAAGTGCGCGGGTATTTGAAGATGAATTATTCC
TGTGTCTGTTGGATGTTTTAGAGGCACTGTTTATAAAATCAGCTAATAAGTCAGAGGTACTAGAAACAATGAAACCATTA
CGGGATAGTCGTGGTTACCCCTATCTTGAGGAACTGGCATTAGAAGCAGCTCTATTCTATACTAGGAATGAGCGGCCAAA
TGATTCCATATTTTTTTATGATCAGATGGTGCAGGCTCAGAAACAAATCAAAAGGGGCGACTTTCTGTATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (3-64)

• Tetratricopeptide repeat (TPR_12) (215-285)

3D structure

• AlphaFold DB: Q65M68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.5	100	0.379
rapF	Bacillus subtilis subsp. subtilis str. 168	36.702	100	0.371