Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FO458_RS04875 | Genome accession | NZ_CP041726 |
| Coordinates | 970560..971534 (+) | Length | 324 a.a. |
| NCBI ID | WP_002478129.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SL118 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 965560..976534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO458_RS04840 (FO458_04840) | rpmG | 965984..966133 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| FO458_RS04845 (FO458_04845) | - | 966383..966919 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| FO458_RS04850 (FO458_04850) | - | 966936..968393 (+) | 1458 | WP_002478127.1 | rhomboid family intramembrane serine protease | - |
| FO458_RS04855 (FO458_04855) | - | 968377..968580 (+) | 204 | WP_070648475.1 | YqgQ family protein | - |
| FO458_RS04860 (FO458_04860) | - | 968577..969563 (+) | 987 | WP_070648477.1 | ROK family glucokinase | - |
| FO458_RS04865 (FO458_04865) | - | 969563..969886 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| FO458_RS04870 (FO458_04870) | - | 969890..970513 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| FO458_RS04875 (FO458_04875) | comGA | 970560..971534 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FO458_RS04880 (FO458_04880) | comGB | 971506..972570 (+) | 1065 | WP_070648479.1 | competence type IV pilus assembly protein ComGB | - |
| FO458_RS04885 (FO458_04885) | comGC | 972585..972899 (+) | 315 | WP_070648481.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FO458_RS04890 (FO458_04890) | comGD | 972832..973326 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| FO458_RS04895 (FO458_04895) | - | 973313..973606 (+) | 294 | WP_070648483.1 | hypothetical protein | - |
| FO458_RS04900 (FO458_04900) | - | 973668..974027 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| FO458_RS04910 (FO458_04910) | - | 974181..974699 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| FO458_RS04915 (FO458_04915) | gcvT | 974870..975961 (+) | 1092 | WP_037544364.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36932.76 Da Isoelectric Point: 7.8896
>NTDB_id=373520 FO458_RS04875 WP_002478129.1 970560..971534(+) (comGA) [Staphylococcus lugdunensis strain SL118]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=373520 FO458_RS04875 WP_002478129.1 970560..971534(+) (comGA) [Staphylococcus lugdunensis strain SL118]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
71.207 |
99.691 |
0.71 |
| comGA | Staphylococcus aureus N315 |
71.207 |
99.691 |
0.71 |