Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6536_RS04890 Genome accession   NZ_CP049330
Coordinates   964481..964699 (+) Length   72 a.a.
NCBI ID   WP_031305060.1    Uniprot ID   -
Organism   Bacillus licheniformis strain CP6     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959481..969699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS04865 (G6536_04935) - 959514..959849 (-) 336 WP_016886588.1 hypothetical protein -
  G6536_RS04870 (G6536_04940) - 959867..961390 (-) 1524 WP_071583950.1 T7SS effector LXG polymorphic toxin -
  G6536_RS04875 (G6536_04945) - 961646..962767 (+) 1122 WP_065644213.1 Rap family tetratricopeptide repeat protein -
  G6536_RS04880 (G6536_04950) - 962990..963358 (-) 369 WP_080618531.1 YolD-like family protein -
  G6536_RS04885 (G6536_04955) - 963448..964260 (-) 813 WP_207185283.1 hypothetical protein -
  G6536_RS04890 (G6536_04960) dinR/lexA 964481..964699 (+) 219 WP_031305060.1 transcriptional regulator Regulator
  G6536_RS04895 (G6536_04965) - 964724..965038 (-) 315 WP_071583735.1 DUF1827 family protein -
  G6536_RS04900 (G6536_04970) - 965766..966806 (+) 1041 WP_009329010.1 Rap family tetratricopeptide repeat protein -
  G6536_RS04905 (G6536_04975) - 966861..966998 (+) 138 WP_011201590.1 hypothetical protein -
  G6536_RS04910 (G6536_04990) - 969327..969542 (+) 216 WP_003179974.1 hypothetical protein -

Sequence

Protein


Download         Length: 72 a.a.        Molecular weight: 8235.54 Da        Isoelectric Point: 10.2439

>NTDB_id=373519 G6536_RS04890 WP_031305060.1 964481..964699(+) (dinR/lexA) [Bacillus licheniformis strain CP6]
MKKSEQILEAIDELTKEKGFPPSVREIGERVGLKSSSTTKGHLDRLRKKGLVDWEEGKTRTLHLLYKEKATI

Nucleotide


Download         Length: 219 bp        

>NTDB_id=373519 G6536_RS04890 WP_031305060.1 964481..964699(+) (dinR/lexA) [Bacillus licheniformis strain CP6]
ATGAAAAAATCCGAACAAATATTAGAAGCTATAGACGAATTAACTAAAGAAAAAGGATTTCCGCCCTCTGTTAGGGAAAT
AGGCGAAAGGGTTGGTTTAAAATCTTCAAGCACAACAAAAGGTCACCTTGACCGGTTGCGAAAAAAGGGGCTTGTTGATT
GGGAAGAAGGTAAGACAAGAACGTTACATTTATTATATAAAGAAAAAGCCACCATTTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(5-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

52.239

93.056

0.486