Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   G6536_RS03980 Genome accession   NZ_CP049330
Coordinates   806443..807159 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain CP6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 801443..812159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6536_RS03960 (G6536_04025) - 801911..802297 (+) 387 WP_075178098.1 DUF1992 domain-containing protein -
  G6536_RS03965 (G6536_04030) - 802359..803066 (+) 708 Protein_748 alanine:cation symporter family protein -
  G6536_RS03970 (G6536_04035) treP 803247..804659 (+) 1413 WP_069500302.1 PTS system trehalose-specific EIIBC component -
  G6536_RS03975 (G6536_04040) treC 804733..806421 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  G6536_RS03980 (G6536_04045) treR 806443..807159 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  G6536_RS03985 (G6536_04050) - 807266..807958 (+) 693 WP_075218303.1 N-acetyltransferase -
  G6536_RS03990 (G6536_04055) - 808085..809410 (+) 1326 WP_075218302.1 NTTRR-F1 domain -
  G6536_RS22605 - 809630..810061 (+) 432 WP_242551797.1 NTTRR-F1 domain -
  G6536_RS03995 (G6536_04060) - 810076..811362 (+) 1287 WP_242551798.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=373515 G6536_RS03980 WP_009329065.1 806443..807159(+) (treR) [Bacillus licheniformis strain CP6]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=373515 G6536_RS03980 WP_009329065.1 806443..807159(+) (treR) [Bacillus licheniformis strain CP6]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412