Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GC56T3_RS11115 Genome accession   NC_014206
Coordinates   2240620..2241567 (-) Length   315 a.a.
NCBI ID   WP_013145615.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235620..2246567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS11095 (GC56T3_2126) - 2236934..2237662 (+) 729 WP_013145611.1 hypothetical protein -
  GC56T3_RS11100 (GC56T3_2127) - 2237701..2238660 (-) 960 WP_013145612.1 siderophore ABC transporter substrate-binding protein -
  GC56T3_RS11105 (GC56T3_2128) - 2238928..2239683 (-) 756 WP_013145613.1 ABC transporter ATP-binding protein -
  GC56T3_RS11110 (GC56T3_2129) - 2239677..2240627 (-) 951 WP_013145614.1 iron chelate uptake ABC transporter family permease subunit -
  GC56T3_RS11115 (GC56T3_2130) ceuB 2240620..2241567 (-) 948 WP_013145615.1 ABC transporter permease Machinery gene
  GC56T3_RS11120 (GC56T3_2131) gucD 2242021..2243487 (-) 1467 WP_013145616.1 alpha-ketoglutaric semialdehyde dehydrogenase GucD -
  GC56T3_RS11125 (GC56T3_2132) cysI 2243845..2245566 (-) 1722 WP_013145617.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34572.48 Da        Isoelectric Point: 9.4681

>NTDB_id=37351 GC56T3_RS11115 WP_013145615.1 2240620..2241567(-) (ceuB) [Geobacillus sp. C56-T3]
MKKWMVLLVVLAAASLFVGVHDLSPRELFAGDREAWEVFLISRLPRLISILIAGSSVSICGLIMQQLSQNRFVSPTTAGT
MDWARLGLLVSMIAFAAAGPLVKAAIAVVFAFAGTLLFMTVLDRVKYKDSIFIPLIGLMFGNIVGSVTTFLAYKYDLIQS
MSAWMHGDFSVMMQGRYEMLYVSVPLMAIAYVYANRFTIAGMGEEMATNLGVRYRSIVYTGLLIVAVVSAVEVLTVGTLP
FLGLIVPNIVTMYYGDHLRKVLPLTAIFGALFVLICDVFGRVAIYPYEIPIGLTVGVIGSGVFLYLLVRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=37351 GC56T3_RS11115 WP_013145615.1 2240620..2241567(-) (ceuB) [Geobacillus sp. C56-T3]
ATGAAAAAATGGATGGTGCTTCTTGTTGTTTTGGCTGCGGCATCATTGTTTGTCGGGGTGCATGATTTATCGCCTCGCGA
GCTGTTTGCCGGCGACCGTGAGGCGTGGGAAGTGTTTTTGATCAGTCGCTTGCCGAGGCTCATCAGCATTCTGATCGCCG
GGTCAAGCGTGAGCATTTGCGGCTTGATCATGCAGCAGTTGAGCCAAAACCGATTTGTGTCGCCGACGACGGCGGGAACG
ATGGATTGGGCGCGGCTTGGCCTGTTGGTGTCCATGATTGCATTCGCTGCCGCAGGGCCGCTTGTGAAGGCGGCTATTGC
CGTTGTGTTTGCGTTTGCGGGGACGCTGCTGTTTATGACGGTTTTGGATCGTGTGAAGTACAAAGATTCGATCTTTATTC
CGCTCATCGGCTTGATGTTTGGCAATATTGTCGGTTCTGTCACGACGTTTTTGGCTTATAAATATGATTTGATTCAATCG
ATGTCCGCATGGATGCACGGCGATTTTTCCGTTATGATGCAAGGACGCTATGAAATGCTGTATGTGAGCGTTCCGCTCAT
GGCAATCGCTTATGTATACGCCAATCGGTTTACGATCGCCGGCATGGGGGAGGAGATGGCGACGAACTTAGGGGTTCGCT
ACCGTTCGATTGTCTACACCGGTCTCCTCATTGTCGCTGTTGTTTCTGCTGTTGAGGTGTTGACGGTTGGGACGCTGCCG
TTTTTAGGGCTGATCGTTCCGAACATTGTCACGATGTATTATGGGGATCATTTGCGCAAAGTATTGCCGTTGACAGCCAT
ATTTGGCGCTTTGTTTGTGCTAATTTGCGATGTATTTGGCCGAGTCGCCATTTATCCATACGAAATTCCGATCGGCTTGA
CGGTTGGAGTAATCGGAAGCGGTGTCTTTTTATATTTGCTCGTAAGGAGAACGAAGCAGTATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(7-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.408

99.683

0.483

Multiple sequence alignment