Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GC56T3_RS05895 Genome accession   NC_014206
Coordinates   1150097..1151818 (+) Length   573 a.a.
NCBI ID   WP_013144775.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145097..1156818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS05870 (GC56T3_1096) - 1145352..1145582 (+) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -
  GC56T3_RS05875 (GC56T3_1097) - 1145586..1146479 (+) 894 WP_012820586.1 polyprenyl synthetase family protein -
  GC56T3_RS05880 (GC56T3_1098) dxs 1146727..1148619 (+) 1893 WP_013144772.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GC56T3_RS05885 (GC56T3_1099) - 1148623..1149471 (+) 849 WP_013144773.1 TlyA family RNA methyltransferase -
  GC56T3_RS05890 (GC56T3_1100) ahrC 1149521..1149970 (+) 450 WP_013144774.1 transcriptional regulator AhrC/ArgR -
  GC56T3_RS05895 (GC56T3_1101) recN 1150097..1151818 (+) 1722 WP_013144775.1 DNA repair protein RecN Machinery gene
  GC56T3_RS05900 (GC56T3_1102) spoIVB 1152092..1153387 (+) 1296 WP_013144776.1 SpoIVB peptidase -
  GC56T3_RS05905 (GC56T3_1103) spo0A 1153772..1154590 (+) 819 WP_193568255.1 sporulation transcription factor Spo0A -
  GC56T3_RS18415 (GC56T3_1104) - 1154742..1154894 (-) 153 WP_011231868.1 YycC family protein -
  GC56T3_RS05910 (GC56T3_1105) - 1155003..1155731 (+) 729 WP_013144778.1 glycerophosphodiester phosphodiesterase -
  GC56T3_RS05915 (GC56T3_1106) - 1155806..1156054 (-) 249 WP_013144779.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64317.54 Da        Isoelectric Point: 4.9253

>NTDB_id=37347 GC56T3_RS05895 WP_013144775.1 1150097..1151818(+) (recN) [Geobacillus sp. C56-T3]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDTSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDATLKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=37347 GC56T3_RS05895 WP_013144775.1 1150097..1151818(+) (recN) [Geobacillus sp. C56-T3]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTCGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATACGTCCCGCCATCTGCCGCTTTTAGACGAGTTTGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGCGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAACGCTCAAAGA
TGCGCATGAAACGACGTCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AGTACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTACGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTTACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCAGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGTGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGACGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCGATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.62

Multiple sequence alignment