Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GC56T3_RS05645 | Genome accession | NC_014206 |
| Coordinates | 1106625..1107698 (+) | Length | 357 a.a. |
| NCBI ID | WP_013144742.1 | Uniprot ID | - |
| Organism | Geobacillus sp. C56-T3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1101625..1112698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GC56T3_RS18410 (GC56T3_1047) | - | 1102819..1102995 (-) | 177 | WP_011231921.1 | DUF2759 domain-containing protein | - |
| GC56T3_RS05625 (GC56T3_1048) | - | 1103164..1103796 (+) | 633 | WP_012820544.1 | MBL fold metallo-hydrolase | - |
| GC56T3_RS05630 (GC56T3_1049) | - | 1104117..1105250 (+) | 1134 | WP_012820545.1 | class I SAM-dependent methyltransferase | - |
| GC56T3_RS05635 (GC56T3_1050) | - | 1105334..1105576 (-) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GC56T3_RS05640 (GC56T3_1051) | - | 1105734..1106432 (-) | 699 | WP_013144741.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GC56T3_RS05645 (GC56T3_1052) | comGA | 1106625..1107698 (+) | 1074 | WP_013144742.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GC56T3_RS05650 (GC56T3_1053) | comGB | 1107695..1108723 (+) | 1029 | WP_013144743.1 | competence type IV pilus assembly protein ComGB | - |
| GC56T3_RS05655 (GC56T3_1054) | comGC | 1108926..1109222 (+) | 297 | WP_012820551.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GC56T3_RS05660 (GC56T3_1055) | comGD | 1109212..1109649 (+) | 438 | WP_013144744.1 | competence type IV pilus minor pilin ComGD | - |
| GC56T3_RS05665 (GC56T3_1056) | - | 1109633..1109959 (+) | 327 | WP_013144745.1 | competence protein ComG | - |
| GC56T3_RS05670 (GC56T3_1057) | comGF | 1109938..1110384 (+) | 447 | WP_013144746.1 | competence type IV pilus minor pilin ComGF | - |
| GC56T3_RS05675 (GC56T3_1058) | comGG | 1110459..1110848 (+) | 390 | WP_013144747.1 | competence type IV pilus minor pilin ComGG | - |
| GC56T3_RS05680 (GC56T3_1059) | - | 1110894..1111073 (+) | 180 | WP_011231910.1 | YqzE family protein | - |
| GC56T3_RS05685 (GC56T3_1060) | - | 1111176..1111970 (-) | 795 | WP_013144748.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39650.13 Da Isoelectric Point: 8.1836
>NTDB_id=37345 GC56T3_RS05645 WP_013144742.1 1106625..1107698(+) (comGA) [Geobacillus sp. C56-T3]
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIAHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLPLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAAGLKAALRHDPDVLMVGEIRDHDTAAIAIRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIVLGYLPVRMLELVGGEER
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIAHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLPLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAAGLKAALRHDPDVLMVGEIRDHDTAAIAIRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIVLGYLPVRMLELVGGEER
Nucleotide
Download Length: 1074 bp
>NTDB_id=37345 GC56T3_RS05645 WP_013144742.1 1106625..1107698(+) (comGA) [Geobacillus sp. C56-T3]
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTTCTCGCCGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGTCTCATCGCCCACTTTAAATTTTTAGCCGGCATGGACATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTGGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCAACGCTCTACGACGAAAGTCTTGTCATTCG
ACTTCTGCCGCAGCGCCTCCCGTTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTCA
TGCAGCATCCGCAAGGACTCGTGCTGTTGACCGGTCCGACGGGGTCGGGAAAAACGACGACCCTGTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCAATCGAAAAACAGAACGAACGACTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACATACGCCGCTGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGACACGGCGGCCATTGCCATCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGTTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCCAAGCGCTCTTATATGACGCTCGCTCGCTTGATCCGCAAGGGGATTGTGCTTGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGAAGAAAGATGA
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTTCTCGCCGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGTCTCATCGCCCACTTTAAATTTTTAGCCGGCATGGACATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTGGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCAACGCTCTACGACGAAAGTCTTGTCATTCG
ACTTCTGCCGCAGCGCCTCCCGTTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTCA
TGCAGCATCCGCAAGGACTCGTGCTGTTGACCGGTCCGACGGGGTCGGGAAAAACGACGACCCTGTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCAATCGAAAAACAGAACGAACGACTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACATACGCCGCTGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGACACGGCGGCCATTGCCATCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGTTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCCAAGCGCTCTTATATGACGCTCGCTCGCTTGATCCGCAAGGGGATTGTGCTTGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGAAGAAAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
50.291 |
96.359 |
0.485 |