Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | G5571_RS03095 | Genome accession | NZ_CP049314 |
| Coordinates | 643528..644043 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain Ex003 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 638528..649043
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G5571_RS03070 (G5571_00611) | - | 639074..640717 (+) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
| G5571_RS03075 (G5571_00612) | - | 640710..641195 (+) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| G5571_RS03080 (G5571_00613) | - | 641278..641631 (+) | 354 | WP_000457783.1 | DMT family transporter | - |
| G5571_RS03085 (G5571_00614) | - | 641674..642117 (-) | 444 | WP_001176585.1 | VOC family protein | - |
| G5571_RS03090 (G5571_00615) | - | 642244..643419 (-) | 1176 | WP_000129968.1 | thiolase family protein | - |
| G5571_RS03095 (G5571_00616) | fimT | 643528..644043 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| G5571_RS03100 (G5571_00617) | omp38 | 644423..645484 (+) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| G5571_RS03105 (G5571_00618) | - | 645607..645750 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| G5571_RS03110 (G5571_00619) | - | 645769..646974 (-) | 1206 | WP_000512708.1 | RtcB family protein | - |
| G5571_RS03115 (G5571_00620) | - | 647252..648712 (-) | 1461 | WP_000004974.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=373440 G5571_RS03095 WP_000477151.1 643528..644043(-) (fimT) [Acinetobacter baumannii strain Ex003]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=373440 G5571_RS03095 WP_000477151.1 643528..644043(-) (fimT) [Acinetobacter baumannii strain Ex003]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |