Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   E3226_RS05460 Genome accession   NZ_CP041713
Coordinates   1149754..1150413 (-) Length   219 a.a.
NCBI ID   WP_135842923.1    Uniprot ID   -
Organism   Legionella geestiana strain HL-0438-4026     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144754..1155413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3226_RS05445 (E3226_005160) gap 1146468..1147475 (+) 1008 WP_028385654.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  E3226_RS05450 (E3226_005165) - 1147472..1148662 (+) 1191 WP_028385653.1 phosphoglycerate kinase -
  E3226_RS05455 (E3226_005170) - 1149393..1149731 (-) 339 WP_028385652.1 hypothetical protein -
  E3226_RS05460 (E3226_005175) rocC 1149754..1150413 (-) 660 WP_135842923.1 ProQ/FinO family protein Regulator
  E3226_RS05465 (E3226_005180) - 1150568..1150777 (+) 210 WP_028385650.1 YqaE/Pmp3 family membrane protein -
  E3226_RS05470 (E3226_005185) dapB 1150789..1151526 (+) 738 WP_028385649.1 4-hydroxy-tetrahydrodipicolinate reductase -
  E3226_RS05475 (E3226_005190) - 1151580..1154540 (-) 2961 WP_135842452.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24068.60 Da        Isoelectric Point: 10.9725

>NTDB_id=373352 E3226_RS05460 WP_135842923.1 1149754..1150413(-) (rocC) [Legionella geestiana strain HL-0438-4026]
MRRQELHPRTAVINRAQKLQSKKARVDALSWLAARFPEAFDNTSRIRPLKQGIMEDILATVADEAEAAGISKSKLREAVV
VFTRRVDYLTCLKAREMRIDLQGSPAGLVTEEEAERAAVKIRKRVEKSARNARRNNLVKMQAFNPSRAGSGMPVMADDSA
LPERAPAWSAPATPAARAPSVVVRHKSTRAFDPDAVARLKAKLGLSARADAPEEEEAHG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=373352 E3226_RS05460 WP_135842923.1 1149754..1150413(-) (rocC) [Legionella geestiana strain HL-0438-4026]
ATGAGAAGACAGGAGCTGCACCCGCGCACCGCCGTTATCAACAGAGCGCAGAAACTGCAATCCAAAAAAGCGCGGGTGGA
TGCCCTCTCCTGGCTTGCCGCGCGCTTTCCTGAGGCGTTTGACAATACCAGTCGTATCCGCCCGCTGAAGCAGGGAATTA
TGGAAGACATTCTCGCCACTGTTGCTGATGAGGCAGAGGCCGCTGGAATTTCCAAAAGCAAGTTACGCGAAGCCGTGGTA
GTTTTTACCCGGCGCGTTGATTATCTGACGTGTCTTAAGGCGCGGGAAATGCGCATTGATTTGCAGGGCAGCCCTGCAGG
CCTTGTTACGGAAGAAGAAGCTGAGCGCGCCGCCGTAAAGATTCGCAAGCGGGTTGAAAAAAGTGCGCGCAATGCCCGCC
GTAATAATCTTGTTAAAATGCAGGCTTTTAATCCTTCCCGCGCAGGTAGCGGCATGCCCGTCATGGCGGATGATTCTGCC
CTGCCTGAGCGCGCACCGGCATGGAGTGCGCCTGCAACTCCTGCTGCGCGCGCGCCATCGGTCGTTGTCCGCCATAAAAG
TACCCGGGCTTTTGACCCGGATGCCGTAGCACGCCTGAAAGCAAAACTCGGGCTGTCAGCGCGAGCGGATGCACCGGAGG
AAGAAGAAGCACACGGGTAG

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

58.261

100

0.612

Multiple sequence alignment