Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E3226_RS03630 Genome accession   NZ_CP041713
Coordinates   768280..769635 (-) Length   451 a.a.
NCBI ID   WP_028386817.1    Uniprot ID   -
Organism   Legionella geestiana strain HL-0438-4026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 763280..774635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3226_RS03615 (E3226_003330) - 763977..764783 (-) 807 WP_135842352.1 phosphatidate cytidylyltransferase -
  E3226_RS03620 (E3226_003335) uppS 764776..765510 (-) 735 WP_135842353.1 polyprenyl diphosphate synthase -
  E3226_RS03625 (E3226_003340) - 765780..768236 (+) 2457 WP_135842354.1 hypothetical protein -
  E3226_RS03630 (E3226_003345) radA 768280..769635 (-) 1356 WP_028386817.1 DNA repair protein RadA Machinery gene
  E3226_RS03635 (E3226_003350) - 769714..770760 (+) 1047 WP_028386816.1 FAD/NAD(P)-binding protein -
  E3226_RS03640 (E3226_003355) - 770790..771008 (+) 219 WP_028386815.1 exodeoxyribonuclease VII small subunit -
  E3226_RS03645 (E3226_003360) - 771001..771936 (+) 936 WP_065230368.1 polyprenyl synthetase family protein -
  E3226_RS03650 (E3226_003365) - 771915..772697 (+) 783 WP_035902886.1 mechanosensitive ion channel family protein -
  E3226_RS03655 (E3226_003370) - 772694..773800 (+) 1107 WP_028386814.1 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48500.65 Da        Isoelectric Point: 7.4672

>NTDB_id=373348 E3226_RS03630 WP_028386817.1 768280..769635(-) (radA) [Legionella geestiana strain HL-0438-4026]
MKTKTRFVCSACAAVFTQWAGQCTQCGAWNAVSEEARMPARPDSRRGNYANERSVIVALEDVSLEARERTDCGLSELNRV
LGGGLVDGAVVLIGGDPGIGKSTLLLQTLAALSAHQPVLYVTGEESLQQVALRARRLQLPLSGLSLLAETHIESILEQAV
RARPRTLVIDSVQTIYTDTLTSAPGSVSQVREAAAQLVRFAKMTGTSVFIVGHVTKDGSLAGPRVLEHMVDCVLYFEGQG
DSRFRVIRAIKNRFGAVNELGVFAMTDRGLREVANPSAIFLSRQPDPAPGSAVMVTWEGSRPMLVEVQALVDEAHGGQPR
RVVAGLEQNRLAILLAVLHRHAGIATFDQDVFVSVVGGVRVGETAIDLALLAAVVSSLRNHVFCRETIVFGEVGLAGEIR
PVQSGQERLREAAKHGFRRAIVPKANAPRQAGDMEVVAVGHLQEALEHFFA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=373348 E3226_RS03630 WP_028386817.1 768280..769635(-) (radA) [Legionella geestiana strain HL-0438-4026]
ATGAAAACTAAAACGCGTTTTGTATGCAGCGCATGTGCTGCAGTCTTCACACAGTGGGCAGGGCAGTGCACCCAGTGCGG
GGCATGGAATGCGGTTTCTGAAGAGGCGCGCATGCCAGCGCGTCCTGACAGTCGCCGTGGAAATTATGCCAATGAACGCT
CCGTGATTGTGGCGCTTGAGGATGTGAGCCTTGAGGCACGTGAGCGCACGGACTGTGGGCTTTCGGAATTAAACCGCGTG
CTTGGCGGGGGGCTTGTGGATGGTGCGGTGGTTCTGATTGGCGGGGACCCCGGCATTGGCAAATCAACGCTGCTGCTGCA
GACGCTTGCGGCATTATCTGCTCATCAGCCGGTACTTTATGTAACCGGTGAGGAATCCCTGCAACAGGTGGCCCTGCGCG
CACGCCGTCTGCAGCTGCCGCTTTCAGGGCTTTCGCTGCTCGCAGAGACGCACATTGAGTCCATCCTTGAACAGGCGGTA
CGTGCCAGGCCGCGAACGCTCGTGATTGATTCCGTGCAGACCATCTACACCGATACGCTGACATCAGCGCCCGGAAGCGT
GAGCCAGGTGCGCGAAGCCGCAGCCCAGCTTGTGCGTTTTGCCAAAATGACAGGAACCTCCGTGTTTATCGTCGGTCATG
TCACCAAGGATGGCAGCCTCGCAGGTCCGCGCGTACTGGAGCACATGGTCGACTGCGTGCTCTATTTCGAAGGCCAGGGA
GACAGCCGTTTTCGTGTGATTCGCGCCATCAAAAACCGCTTTGGAGCCGTCAACGAGCTTGGGGTGTTTGCGATGACCGA
CCGCGGGCTGCGTGAAGTGGCAAATCCCTCGGCAATTTTTCTTTCGCGACAACCCGACCCGGCTCCCGGCAGCGCCGTGA
TGGTCACCTGGGAAGGTTCACGCCCGATGCTTGTTGAGGTGCAGGCACTGGTTGATGAAGCGCACGGCGGGCAGCCACGG
CGGGTTGTGGCGGGTCTTGAGCAGAACCGCCTTGCCATTCTGCTGGCCGTTTTGCACCGCCATGCGGGCATTGCCACGTT
TGACCAGGATGTCTTCGTGAGCGTGGTGGGAGGGGTGCGTGTCGGTGAGACGGCGATTGATCTTGCACTTCTGGCTGCGG
TGGTTTCAAGCCTTCGCAATCACGTGTTCTGCCGCGAAACCATTGTCTTTGGCGAAGTGGGACTGGCCGGTGAAATCCGC
CCGGTGCAAAGCGGCCAGGAGCGGCTGCGCGAAGCGGCAAAGCACGGGTTTCGCCGCGCGATTGTGCCAAAGGCGAATGC
CCCGCGCCAGGCCGGTGATATGGAAGTGGTCGCCGTTGGACATTTGCAGGAAGCCCTCGAGCATTTTTTTGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-426)

AAA domain (AAA_25)

(73-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.797

100

0.481
  radA Streptococcus mitis SK321

46.239

100

0.463
  radA Streptococcus mitis NCTC 12261

45.714

100

0.461
  radA Streptococcus pneumoniae Rx1

45.714

100

0.461
  radA Streptococcus pneumoniae D39

45.714

100

0.461
  radA Streptococcus pneumoniae R6

45.714

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.714

100

0.461

Multiple sequence alignment