Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   G6M86_RS11195 Genome accession   NZ_CP049216
Coordinates   2242419..2244239 (+) Length   606 a.a.
NCBI ID   WP_065702796.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Q15/94     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237419..2249239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M86_RS11180 (G6M86_11160) - 2237915..2238802 (+) 888 WP_065702794.1 SMP-30/gluconolactonase/LRE family protein -
  G6M86_RS11185 (G6M86_11165) - 2238897..2240249 (-) 1353 WP_003519050.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  G6M86_RS11190 (G6M86_11170) - 2240392..2242011 (-) 1620 WP_049790311.1 response regulator -
  G6M86_RS11195 (G6M86_11175) hexB 2242419..2244239 (+) 1821 WP_065702796.1 DNA mismatch repair endonuclease MutL Machinery gene
  G6M86_RS11200 (G6M86_11180) - 2244390..2244611 (+) 222 WP_003519053.1 DUF2093 domain-containing protein -
  G6M86_RS11205 (G6M86_11185) - 2244734..2245021 (+) 288 WP_025592606.1 DUF3892 domain-containing protein -
  G6M86_RS11210 (G6M86_11190) lpxK 2245097..2246143 (-) 1047 WP_065702798.1 tetraacyldisaccharide 4'-kinase -
  G6M86_RS11215 (G6M86_11195) - 2246309..2247046 (-) 738 WP_065702799.1 HAD family hydrolase -
  G6M86_RS11220 (G6M86_11200) waaA 2247040..2248362 (-) 1323 WP_013635565.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  G6M86_RS11225 (G6M86_11205) - 2248578..2248817 (-) 240 WP_019564234.1 DUF4170 domain-containing protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65129.86 Da        Isoelectric Point: 6.4000

>NTDB_id=373335 G6M86_RS11195 WP_065702796.1 2242419..2244239(+) (hexB) [Agrobacterium tumefaciens strain Q15/94]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAISGNMQFAEAVQSRFSDITMPTARAEPRE
VYEASASPSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=373335 G6M86_RS11195 WP_065702796.1 2242419..2244239(+) (hexB) [Agrobacterium tumefaciens strain Q15/94]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATAGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCGGGCGGTGGCAAGGGACTGG
TGCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGACGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCTGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAAACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACACTTGAAATCCCCTCCACCGGCGACGATCATCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGCGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTCTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCCGAAACCGTACCGCACGGGCGATATCCGGTCGCAGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTTCGCGATCCCGGCCTCGTTCGCGGACTGATCGTCGGTGCGATC
CGCCAGGCGCTGACCCGCGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCATTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCCCGCGAG
GTTTACGAGGCCTCGGCAAGCCCGTCGCTCGAACCGTCACAATATCCGCTCGGCGCTGCGCGGGCGCAGTTGCACCAGAA
TTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGATCAGCATGCGGCGCATGAACGGCTGGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATTATCGACCTTCCCGAAGAGGAT
TGCGACCGGCTGATGGACCATGCGGCTGGTTTCGATGCACTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCGGCGATGCTTGGCGAGGTCAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCCACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTAAGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(416-562)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.317

100

0.365

Multiple sequence alignment