Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   G6M86_RS07845 Genome accession   NZ_CP049216
Coordinates   1578372..1579094 (+) Length   240 a.a.
NCBI ID   WP_003512859.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Q15/94     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573372..1584094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6M86_RS07825 (G6M86_07825) - 1574461..1574778 (-) 318 WP_003512872.1 FtsB family cell division protein -
  G6M86_RS07830 (G6M86_07830) eno 1575013..1576287 (-) 1275 WP_003512870.1 phosphopyruvate hydratase -
  G6M86_RS07835 (G6M86_07835) kdsA 1576435..1577280 (-) 846 WP_065704620.1 3-deoxy-8-phosphooctulonate synthase -
  G6M86_RS07840 (G6M86_07840) - 1577280..1578161 (-) 882 WP_065704622.1 VOC family protein -
  G6M86_RS07845 (G6M86_07845) dinR/lexA 1578372..1579094 (+) 723 WP_003512859.1 transcriptional repressor LexA Regulator
  G6M86_RS07850 (G6M86_07850) - 1579533..1580216 (+) 684 WP_065704624.1 glutathione S-transferase family protein -
  G6M86_RS07855 (G6M86_07855) - 1580233..1582668 (-) 2436 WP_333721780.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25998.93 Da        Isoelectric Point: 9.3311

>NTDB_id=373326 G6M86_RS07845 WP_003512859.1 1578372..1579094(+) (dinR/lexA) [Agrobacterium tumefaciens strain Q15/94]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=373326 G6M86_RS07845 WP_003512859.1 1578372..1579094(+) (dinR/lexA) [Agrobacterium tumefaciens strain Q15/94]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGCGCAAGGCCGCAG
CGCGGCTTTTCGCCAAGCGTTATCGAAGGCAGCCTTGGCAAACCCAAAACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATTCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGATATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATTTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363