Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   G6Z93_RS22385 Genome accession   NZ_CP049204
Coordinates   4730682..4732511 (-) Length   609 a.a.
NCBI ID   WP_085454505.1    Uniprot ID   -
Organism   Escherichia coli strain PapM-32-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4725682..4737511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z93_RS22360 (G6Z93_22360) bioP 4726400..4727299 (-) 900 WP_001196238.1 biotin transporter -
  G6Z93_RS22365 (G6Z93_22365) yigL 4727375..4728175 (-) 801 WP_000285352.1 sugar/pyridoxal phosphate phosphatase YigL -
  G6Z93_RS22370 (G6Z93_22370) pldB 4728183..4729205 (-) 1023 WP_097470669.1 lysophospholipase L2 -
  G6Z93_RS22375 (G6Z93_22375) rhtB 4729316..4729936 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  G6Z93_RS22380 (G6Z93_22380) rhtC 4729998..4730618 (-) 621 WP_000928824.1 threonine export protein RhtC -
  G6Z93_RS22385 (G6Z93_22385) recQ 4730682..4732511 (-) 1830 WP_085454505.1 ATP-dependent DNA helicase RecQ Machinery gene
  G6Z93_RS22390 (G6Z93_22390) pldA 4732644..4733513 (-) 870 WP_001259700.1 phospholipase A -
  G6Z93_RS22395 (G6Z93_22395) yigI 4733678..4734145 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  G6Z93_RS22400 (G6Z93_22400) rarD 4734197..4735084 (+) 888 WP_000339103.1 EamA family transporter RarD -
  G6Z93_RS22405 (G6Z93_22405) - 4735131..4735430 (-) 300 WP_000526430.1 hypothetical protein -
  G6Z93_RS22410 (G6Z93_22410) - 4736057..4736203 (-) 147 Protein_4421 CorA family divalent cation transporter -
  G6Z93_RS22415 (G6Z93_22415) - 4736387..4737235 (+) 849 WP_001066388.1 YPO3983 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68391.52 Da        Isoelectric Point: 7.0906

>NTDB_id=373302 G6Z93_RS22385 WP_085454505.1 4730682..4732511(-) (recQ) [Escherichia coli strain PapM-32-1]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPNLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=373302 G6Z93_RS22385 WP_085454505.1 4730682..4732511(-) (recQ) [Escherichia coli strain PapM-32-1]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGCCTGGTCGTCATGCCCACCGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAACAGCAACTTGAAGT
GATGACAGGCTGCCGCACCGGGCAAATTCGTCTGCTTTATATCGCCCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGTTTCCCGAATCTGCCGTTTATGGCGCTAACCGCCACCGCCGACGACAC
CACGCGCCAGGATATTGTGCGCCTGTTGGGGCTGAACGATCCGCTAATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAGTTCAAACCGCTCGATCAGTTGATGCGTTACGTGCAGGAACAGCGGGGAAAGTCCGGCATT
ATCTACTGCAACAGTCGGGCGAAAGTAGAAGACACCGCCGCGCGTCTACAAAGCAAGGGGATTAGCGCAGCGGCGTATCA
TGCCGGTCTGGAAAACGATGTCCGCGCCGAAGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTTGGCATGGGCATTAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCTGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTG
GCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGTCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGACGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGG
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGTAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGTAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGCGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

RQC domain (RQC)

(406-514)

DEAD/DEAH box helicase (DEAD)

(28-187)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

HRDC domain (HRDC)

(533-599)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

97.209

0.394