Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FOH38_RS20205 Genome accession   NZ_CP041696
Coordinates   4200082..4201878 (+) Length   598 a.a.
NCBI ID   WP_369436425.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4195082..4206878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS20190 (FOH38_20190) - 4195477..4196454 (-) 978 WP_369436026.1 sensor histidine kinase -
  FOH38_RS20195 (FOH38_20195) - 4196606..4197736 (-) 1131 WP_143999375.1 DUF418 domain-containing protein -
  FOH38_RS20200 (FOH38_20200) rcrP 4198278..4200038 (+) 1761 WP_143998495.1 ABC transporter ATP-binding protein Regulator
  FOH38_RS20205 (FOH38_20205) rcrQ 4200082..4201878 (+) 1797 WP_369436425.1 ABC transporter ATP-binding protein Regulator
  FOH38_RS20210 (FOH38_20210) - 4202517..4203032 (+) 516 WP_049663462.1 hypothetical protein -
  FOH38_RS20215 (FOH38_20215) - 4203497..4203919 (+) 423 WP_369436027.1 hypothetical protein -
  FOH38_RS20220 (FOH38_20220) queF 4204629..4205129 (+) 501 WP_010859453.1 preQ(1) synthase -
  FOH38_RS20225 (FOH38_20225) queC 4205246..4205905 (+) 660 WP_143998496.1 7-cyano-7-deazaguanine synthase QueC -
  FOH38_RS20230 (FOH38_20230) queD 4205909..4206382 (+) 474 WP_143998497.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 66006.35 Da        Isoelectric Point: 5.2582

>NTDB_id=373283 FOH38_RS20205 WP_369436425.1 4200082..4201878(+) (rcrQ) [Lysinibacillus fusiformis strain 1226]
MGRGGPPGMGPMSGEKPKQFKATIRELIEYAKQYIPFVMIALVLALVGAILNVVGPDILSDMTNTIAAGLATSINLDEIK
RLGIILAFMYGLGLFFNYLQGFIMATVTQRITKKMRTDISDKMPGIPLKYFDKTSIGNVLSRVTNDVDTIGQTLNNSLGS
LVSGLATFVGALVMMFYTNWIMAISAILSTIIGFSFMSIIMKGSQKYFKAQQMELGMINGHIEETYAGHTVVKAYNGEEN
AKMVFHDINERLYTNAWKSQFMSGLMMPIMTFVGNFGYVVVCVVGAILVNNDAIQIGTIVAFMMYIRLFTQPLAQLAQAA
TSMQSTAAASERVFEFLKEEELEDESEKTQTLSSVKGDVAFKHVRFGYDEEHTIIKNFSASVKAGQKVAIVGPTGAGKTT
LVNLLMRFYEVNEGEITIDGTPIHSLTRENVHDLFCMVLQDTWLFEGTIRENIVFSKENVTDEQVEQACRAVGLHHFIKT
LPNGYNTVLNDKANLSAGQKQLLTIARAMIENAPLLILDEATSSVDTRTEILIQKAMDELANGKTSFVIAHRLSTIRNAD
LIIVMKDGDIIETGNHEELLEKGGFYAELYNSQFEDAS

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=373283 FOH38_RS20205 WP_369436425.1 4200082..4201878(+) (rcrQ) [Lysinibacillus fusiformis strain 1226]
ATGGGGAGGGGCGGACCTCCAGGAATGGGGCCTATGTCTGGAGAAAAACCAAAGCAATTTAAAGCTACCATTCGTGAACT
AATCGAGTATGCAAAGCAATATATTCCATTTGTCATGATTGCACTTGTACTTGCGTTAGTAGGTGCTATTTTAAATGTAG
TCGGTCCAGATATTTTAAGTGATATGACCAATACAATTGCAGCTGGGTTAGCCACATCCATTAATCTAGATGAAATAAAA
CGTTTAGGCATTATTTTAGCCTTTATGTATGGTCTTGGCTTGTTTTTTAATTATCTTCAAGGCTTTATTATGGCAACAGT
GACGCAGCGTATTACGAAAAAAATGCGTACGGACATCTCTGACAAAATGCCGGGTATCCCTTTAAAATATTTCGATAAAA
CAAGTATCGGGAACGTACTAAGTCGTGTAACAAATGATGTTGATACAATCGGTCAAACATTAAATAACAGCTTAGGTTCT
TTAGTAAGTGGGCTCGCTACATTTGTAGGTGCCCTAGTGATGATGTTTTATACAAACTGGATTATGGCAATCTCGGCGAT
TCTATCTACGATTATTGGTTTTAGCTTCATGTCCATTATTATGAAAGGCTCACAAAAGTACTTTAAAGCACAGCAAATGG
AACTCGGTATGATTAATGGTCATATTGAGGAAACCTATGCGGGTCATACAGTCGTAAAAGCTTATAACGGTGAAGAAAAT
GCAAAGATGGTTTTTCATGATATCAATGAGCGACTGTATACAAATGCGTGGAAATCACAATTTATGTCCGGCTTAATGAT
GCCGATTATGACATTCGTCGGTAATTTTGGCTATGTAGTCGTTTGCGTAGTAGGTGCCATTTTAGTGAATAATGATGCTA
TTCAAATTGGTACAATTGTTGCATTTATGATGTACATTCGCTTATTCACACAGCCACTTGCCCAATTGGCACAAGCTGCA
ACAAGCATGCAGTCAACCGCCGCAGCAAGCGAACGCGTATTTGAATTTTTAAAGGAAGAAGAATTAGAAGATGAAAGCGA
AAAAACACAAACGCTTTCTAGCGTAAAAGGGGATGTGGCATTTAAACATGTTCGTTTTGGCTATGATGAAGAACATACCA
TCATTAAAAATTTTTCTGCTAGTGTAAAGGCAGGTCAAAAAGTTGCGATTGTAGGTCCAACTGGTGCTGGTAAAACGACA
TTAGTCAATCTTCTAATGCGTTTTTATGAAGTAAATGAAGGAGAAATCACCATTGATGGAACACCAATTCATTCATTAAC
GCGTGAAAATGTTCATGATCTGTTTTGCATGGTCCTCCAAGATACTTGGCTATTTGAAGGAACAATCCGTGAGAATATCG
TATTTTCTAAAGAAAATGTAACAGATGAGCAAGTGGAGCAAGCATGTAGAGCAGTTGGTTTACATCATTTTATTAAAACC
TTGCCTAATGGATATAATACAGTGCTGAATGATAAGGCGAACCTATCAGCGGGGCAAAAACAACTGTTAACCATTGCTCG
TGCGATGATTGAAAATGCGCCACTCCTCATTTTAGATGAAGCAACAAGCTCTGTCGATACGCGGACAGAGATACTAATCC
AAAAAGCGATGGATGAGTTAGCTAACGGCAAGACATCCTTCGTAATTGCACACCGTTTATCCACGATAAGAAATGCAGAT
TTAATCATTGTTATGAAAGATGGCGATATTATTGAGACGGGTAACCATGAAGAACTACTTGAAAAAGGCGGATTCTATGC
GGAACTTTACAACAGTCAATTTGAAGATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(376-523)

ABC transporter transmembrane region (ABC_membrane)

(38-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.729

96.321

0.537

Multiple sequence alignment