Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   FOH38_RS20200 Genome accession   NZ_CP041696
Coordinates   4198278..4200038 (+) Length   586 a.a.
NCBI ID   WP_143998495.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4193278..4205038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS20175 (FOH38_20175) - 4193623..4194591 (+) 969 WP_143998492.1 DMT family transporter -
  FOH38_RS20180 (FOH38_20180) - 4194617..4194760 (+) 144 WP_143998493.1 YrzO family protein -
  FOH38_RS20185 (FOH38_20185) - 4194875..4195480 (-) 606 WP_143998494.1 response regulator transcription factor -
  FOH38_RS20190 (FOH38_20190) - 4195477..4196454 (-) 978 WP_369436026.1 sensor histidine kinase -
  FOH38_RS20195 (FOH38_20195) - 4196606..4197736 (-) 1131 WP_143999375.1 DUF418 domain-containing protein -
  FOH38_RS20200 (FOH38_20200) rcrP 4198278..4200038 (+) 1761 WP_143998495.1 ABC transporter ATP-binding protein Regulator
  FOH38_RS20205 (FOH38_20205) rcrQ 4200082..4201878 (+) 1797 WP_369436425.1 ABC transporter ATP-binding protein Regulator
  FOH38_RS20210 (FOH38_20210) - 4202517..4203032 (+) 516 WP_049663462.1 hypothetical protein -
  FOH38_RS20215 (FOH38_20215) - 4203497..4203919 (+) 423 WP_369436027.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65346.37 Da        Isoelectric Point: 8.7401

>NTDB_id=373282 FOH38_RS20200 WP_143998495.1 4198278..4200038(+) (rcrP) [Lysinibacillus fusiformis strain 1226]
MLKIFKYMQRNEWLFVCISLLFIVVQVWLDLKLPDYMAEITTLIQTEGTTTTDLLAPGSYMLLCAIGSMMAAMVVGYFAA
KVAAGLSKRLRAMVYEKTMMFSMEEINSFSTASLITRSTNDITQIQLIIAMGLQAIIKAPILAVWAIVKISGKSWQWSAA
TGVSVFVLIIMLSVVILFALPKFRIIQTLTDNLNRVTREGLTGLRVIRAYNAEHYQHTKFEKANEQLTATNLFVNRVMAI
MMPGMIFIMSGLSVSIYWLGAYIINEANAMNRIQLFSDMVVFSSYAVQVVMAFMMLSMIFIMLPRAAVSAKRILEVLNTK
STITDGKKVEGLPGMVGDVEFRNVDFAYPNTEEPILHNISFTAKKGETVAFIGSTGSGKSTVVNLIPRFYDATRGEILVD
GVNVKAYTQEALRNKIGYVSQKAILFSGTVASNVAYGKNRHEDAQEFLKKAIEIAQAKDFVEEREGQYDSEISQGGTNVS
GGQKQRLSIARAIYHRPEIYIFDDSFSALDYKTDRLLRTALKELTAEATTLIVAQRIGTIKEADQIIVLDKGQIVGKGKH
VELLKNCPTYIEIAYSQLSKEELENE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=373282 FOH38_RS20200 WP_143998495.1 4198278..4200038(+) (rcrP) [Lysinibacillus fusiformis strain 1226]
ATGCTAAAAATATTTAAATATATGCAAAGAAATGAATGGCTTTTTGTTTGTATAAGTCTTTTATTTATCGTCGTACAAGT
TTGGCTTGATTTAAAGTTGCCAGACTATATGGCTGAAATTACGACACTTATCCAAACAGAAGGCACAACGACTACAGATT
TACTGGCACCGGGTAGTTATATGCTATTATGTGCAATCGGTAGTATGATGGCTGCGATGGTGGTTGGTTATTTTGCCGCA
AAGGTGGCAGCAGGACTATCTAAGCGTTTGCGTGCAATGGTGTATGAAAAAACAATGATGTTCTCAATGGAGGAAATCAA
TTCTTTTTCTACAGCTAGTTTAATCACACGATCGACGAATGATATTACGCAGATTCAGCTTATAATTGCAATGGGGTTAC
AGGCTATTATCAAAGCACCTATATTAGCAGTTTGGGCGATTGTGAAAATTTCTGGAAAGAGCTGGCAATGGTCTGCTGCA
ACAGGTGTATCCGTATTTGTGTTAATCATTATGCTAAGTGTAGTGATTTTATTTGCTCTCCCTAAGTTTCGGATTATTCA
AACATTAACAGATAATTTAAATCGTGTGACGAGAGAGGGCTTAACAGGATTAAGAGTGATTCGAGCCTATAATGCGGAAC
ACTATCAACATACGAAATTTGAAAAGGCTAATGAACAATTAACAGCTACTAATCTATTTGTAAATCGAGTGATGGCTATT
ATGATGCCGGGTATGATCTTTATTATGTCTGGTCTTAGCGTATCGATTTATTGGCTTGGGGCTTATATTATTAATGAAGC
AAATGCGATGAATCGCATTCAGCTTTTCTCAGACATGGTGGTATTTAGTTCTTATGCAGTACAAGTGGTGATGGCGTTTA
TGATGCTAAGTATGATTTTTATCATGCTTCCTCGTGCTGCTGTATCGGCAAAACGAATACTCGAAGTGTTAAATACAAAA
TCAACAATAACTGATGGTAAGAAGGTTGAAGGATTGCCTGGAATGGTTGGAGATGTGGAATTCCGTAATGTTGATTTTGC
TTACCCAAATACGGAAGAACCGATACTACACAACATTAGCTTTACAGCAAAAAAAGGGGAAACTGTTGCGTTTATTGGAT
CAACAGGTAGCGGTAAATCAACTGTTGTCAACTTAATTCCTCGTTTCTATGATGCTACAAGAGGAGAAATACTCGTTGAT
GGTGTCAATGTAAAAGCATATACGCAAGAAGCATTGCGCAATAAAATCGGCTATGTTTCGCAAAAGGCTATTTTATTTAG
TGGGACAGTAGCTTCTAATGTAGCGTATGGTAAAAATCGACACGAGGATGCACAAGAGTTCCTGAAAAAAGCGATTGAAA
TTGCCCAAGCGAAGGATTTTGTAGAGGAGCGTGAGGGGCAATATGACAGTGAAATTTCTCAAGGCGGAACAAATGTATCA
GGTGGTCAAAAACAGCGTTTATCTATTGCACGTGCCATTTATCACCGGCCAGAGATTTATATTTTCGATGATTCTTTTTC
GGCACTGGATTATAAGACCGACCGTTTATTGCGAACAGCATTAAAAGAACTAACGGCAGAGGCCACGACCTTAATCGTGG
CACAGCGCATTGGAACGATTAAAGAGGCAGATCAGATTATTGTGTTAGATAAAGGGCAAATTGTGGGCAAGGGTAAACAC
GTAGAATTATTAAAAAATTGTCCTACCTATATCGAAATCGCCTACTCACAACTTTCAAAGGAGGAGCTAGAAAATGAATA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-292)

ABC transporter (ABC_tran)

(356-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.333

100

0.556

Multiple sequence alignment