Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOH38_RS10135 Genome accession   NZ_CP041696
Coordinates   2065761..2067137 (+) Length   458 a.a.
NCBI ID   WP_143996790.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2060761..2072137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS10115 (FOH38_10115) - 2061049..2061519 (+) 471 WP_143996786.1 CtsR family transcriptional regulator -
  FOH38_RS10120 (FOH38_10120) - 2061533..2062078 (+) 546 WP_143996787.1 UvrB/UvrC motif-containing protein -
  FOH38_RS10125 (FOH38_10125) - 2062075..2063184 (+) 1110 WP_143996788.1 protein arginine kinase -
  FOH38_RS10130 (FOH38_10130) - 2063174..2065618 (+) 2445 WP_143996789.1 ATP-dependent Clp protease ATP-binding subunit -
  FOH38_RS10135 (FOH38_10135) radA 2065761..2067137 (+) 1377 WP_143996790.1 DNA repair protein RadA Machinery gene
  FOH38_RS10140 (FOH38_10140) - 2067377..2068471 (+) 1095 WP_143996791.1 PIN/TRAM domain-containing protein -
  FOH38_RS10145 (FOH38_10145) ispD 2068484..2069176 (+) 693 WP_143999271.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FOH38_RS10150 (FOH38_10150) ispF 2069490..2069966 (+) 477 WP_143996792.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  FOH38_RS10155 (FOH38_10155) gltX 2070089..2071549 (+) 1461 WP_143996793.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50135.98 Da        Isoelectric Point: 7.4125

>NTDB_id=373264 FOH38_RS10135 WP_143996790.1 2065761..2067137(+) (radA) [Lysinibacillus fusiformis strain 1226]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEVVAKGPRGAFQHSATVTQKALPIMQIEAAEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVMSQELYIYSETNLELLNQ
TIDDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRGTDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRVFIPTSNIGGWDFPQGIEVVGVETIKDALHACFREV

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=373264 FOH38_RS10135 WP_143996790.1 2065761..2067137(+) (radA) [Lysinibacillus fusiformis strain 1226]
ATGGCAAAGAAAAAAACAAAATTTGTATGCTCGGGTTGTGGCTATGAATCTGCAAAATGGATGGGAAGATGTCCGGGTTG
TGGGGAATGGAACAAGATGGTGGAAGAGGTTGAGGTCGTAGCGAAGGGGCCACGTGGAGCATTCCAGCATTCTGCAACTG
TTACGCAAAAAGCGCTACCAATTATGCAGATAGAGGCGGCGGAGGAATCTCGTGTAGCAACAGAAATGGGCGAGTTGAAC
CGTGTTTTGGGTGGTGGTATCGTGCCTGGATCACTTGTATTAATCGGTGGGGATCCTGGGATTGGAAAGTCAACACTACT
TTTACAGGTGTCAGCGCTGTTGTCGAATAAAGGGCATCGCGTGCTTTATATTTCTGGTGAGGAATCGATTCGTCAAACGA
AGTTGCGTGCTGAGCGTTTAGGCGTAATGTCACAGGAGCTTTATATTTATTCAGAGACGAATTTAGAGTTGTTAAATCAA
ACAATTGATGATGTACAGCCGAAGTTTGTTATTGTGGATTCTATTCAAACCGTTTTTCATCCAGAAGTGACAAGTGCGCC
TGGTAGCGTGTCACAAGTACGTGAATGTACAGCAGAGTTGATGCGTATTGCGAAAACAAAAGGCATTGCAATTTTCTTAG
TAGGTCATGTGACGAAGGAGGGGCAAATTGCTGGTCCACGTATATTAGAGCATATGGTTGATACAGTGTTATATTTTGAG
GGCGAACGTCATCATAACCATCGTATTTTACGAAGTCAGAAAAATCGCTTTGGCTCTACTAATGAAATTGCTATTTTCGA
AATGCTACAAGGTGGCTTAAAGGAAGTCTTAAATCCGTCGGAGCTATTTTTACAGGAACGTTCGCAAGGTGCGGCGGGTT
CAACAATTGTGGCATCAATGGAAGGAACGCGCCCAATTTTAGTAGAAATTCAATCACTTGTGACACCAACAAGCTTTAAT
TACCCAAAACGCATGGCAACTGGGGTGGATCAGAACCGCGTACAATTACTCATGGCAGTACTTGAAAAGCGGATGGGGCT
CATGCTGCAAGCGCAAGATGCATATATTAAAGTTGCTGGCGGGGTGAAGCTTGATGAGCCAGCGATTGACCTTGCTGTGT
TGACGAGTATTGTTTCAAGTTTTAAGGATCAAGCAGTCAGAGGTACAGATTGTTTTATTGGGGAAGTAGGCCTAACCGGG
GAGGTCCGCCGTGTATCTCGTATCGAACAGCGCGTTATAGAAGCAGCAAAACTCGGTTTTAAACGTGTATTCATCCCTAC
TTCTAATATCGGTGGATGGGATTTCCCACAAGGTATTGAAGTTGTCGGTGTTGAAACGATAAAAGATGCATTGCATGCAT
GCTTCAGAGAGGTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-221)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(350-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.087

100

0.701
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62

Multiple sequence alignment