Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   G6Z93_RS08695 Genome accession   NZ_CP049204
Coordinates   1857635..1859062 (-) Length   475 a.a.
NCBI ID   WP_072097939.1    Uniprot ID   -
Organism   Escherichia coli strain PapM-32-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852635..1864062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z93_RS08665 (G6Z93_08665) yeeZ 1852690..1853514 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  G6Z93_RS08670 (G6Z93_08670) yeeY 1853560..1854489 (+) 930 WP_001362948.1 LysR substrate-binding domain-containing protein -
  G6Z93_RS08675 (G6Z93_08675) yoeI 1854704..1854766 (+) 63 WP_010723108.1 membrane protein YoeI -
  G6Z93_RS08680 (G6Z93_08680) plaP 1854756..1856114 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  G6Z93_RS08685 (G6Z93_08685) tsuA 1856293..1857351 (+) 1059 WP_046788382.1 thiosulfate utilization transporter TsuA/YeeE -
  G6Z93_RS08690 (G6Z93_08690) tsuB 1857365..1857592 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  G6Z93_RS08695 (G6Z93_08695) sbcB 1857635..1859062 (-) 1428 WP_072097939.1 exodeoxyribonuclease I Machinery gene
  G6Z93_RS08700 (G6Z93_08700) dacD 1859271..1860437 (+) 1167 WP_001375226.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  G6Z93_RS08705 (G6Z93_08705) sbmC 1860556..1861029 (+) 474 WP_001105382.1 DNA gyrase inhibitor SbmC -
  G6Z93_RS08710 (G6Z93_08710) yeeA 1861228..1862286 (+) 1059 WP_001200891.1 FUSC family protein -
  G6Z93_RS08715 (G6Z93_08715) tmaR 1862458..1862787 (+) 330 WP_000450409.1 DUF496 family protein -
  G6Z93_RS23230 (G6Z93_08720) - 1862888..1863022 (-) 135 WP_042017895.1 propanediol utilization protein -
  G6Z93_RS08725 (G6Z93_08725) cobU 1863246..1863791 (+) 546 WP_047669348.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=373263 G6Z93_RS08695 WP_072097939.1 1857635..1859062(-) (sbcB) [Escherichia coli strain PapM-32-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=373263 G6Z93_RS08695 WP_072097939.1 1857635..1859062(-) (sbcB) [Escherichia coli strain PapM-32-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCTGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579