Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G6Z93_RS05495 Genome accession   NZ_CP049204
Coordinates   1151566..1152081 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PapM-32-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1146566..1157081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z93_RS05450 (G6Z93_05450) csrA 1147285..1147470 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G6Z93_RS05480 (G6Z93_05480) yqaB 1148796..1149362 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G6Z93_RS05485 (G6Z93_05485) yqaA 1149359..1149787 (+) 429 WP_001287454.1 YqaA family protein -
  G6Z93_RS05490 (G6Z93_05490) gshA 1149860..1151416 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  G6Z93_RS05495 (G6Z93_05495) luxS 1151566..1152081 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G6Z93_RS05500 (G6Z93_05500) emrB 1152145..1153683 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G6Z93_RS05505 (G6Z93_05505) emrA 1153700..1154872 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G6Z93_RS05510 (G6Z93_05510) emrR 1154999..1155529 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G6Z93_RS05520 (G6Z93_05520) ygaH 1155620..1155955 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  G6Z93_RS05525 (G6Z93_05525) ygaZ 1155945..1156682 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=373253 G6Z93_RS05495 WP_001130211.1 1151566..1152081(+) (luxS) [Escherichia coli strain PapM-32-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=373253 G6Z93_RS05495 WP_001130211.1 1151566..1152081(+) (luxS) [Escherichia coli strain PapM-32-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731