Detailed information NTG0373249

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: FOH38_RS02435
• Genome accession: NZ_CP041696
• Coordinates: 468151..470592 (-)
• Length: 813 a.a.
• NCBI ID: WP_143995544.1
• Uniprot ID: -
• Organism: Lysinibacillus fusiformis strain 1226
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 463151..475592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOH38_RS02420 (FOH38_02420)	hpaB	464331..465764 (-)	1434	WP_143995541.1	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	-
FOH38_RS02425 (FOH38_02425)	-	466114..466302 (+)	189	WP_143995542.1	hypothetical protein	-
FOH38_RS02430 (FOH38_02430)	-	466434..468125 (-)	1692	WP_143995543.1	polysaccharide deacetylase family protein	-
FOH38_RS02435 (FOH38_02435)	recD2	468151..470592 (-)	2442	WP_143995544.1	ATP-dependent RecD-like DNA helicase	Machinery gene
FOH38_RS02440 (FOH38_02440)	hisA	470787..471554 (+)	768	WP_143999190.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
FOH38_RS02445 (FOH38_02445)	-	471551..471838 (+)	288	WP_143995545.1	hypothetical protein	-
FOH38_RS02450 (FOH38_02450)	-	472138..472872 (+)	735	WP_143995546.1	GTP pyrophosphokinase family protein	-
FOH38_RS02455 (FOH38_02455)	-	472892..473557 (+)	666	WP_369436217.1	VTT domain-containing protein	-
FOH38_RS02460 (FOH38_02460)	-	473577..474236 (-)	660	WP_143995547.1	lipopolysaccharide assembly protein LapB	-
FOH38_RS02465 (FOH38_02465)	mnmA	474436..475560 (-)	1125	WP_143995548.1	tRNA 2-thiouridine(34) synthase MnmA	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 91122.51 Da
• Isoelectric Point: 4.8846

>NTDB_id=373249 FOH38_RS02435 WP_143995544.1 468151..470592(-) (recD2) [Lysinibacillus fusiformis strain 1226]
MAENLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYDDKEIIVVGYFPPLQMDEQYRFTGILRQHPKYGVQ
FQIETFAKEVPATEQGIVHYLSSDLFVGIGRKTAETIVEKLGANALRLILEDPNALDVVPRLSADKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDIDGVGFLRADELGAKLGITGNHPDRIKAAIFHILNAAA
LSDGHVYLDAEHVLPQVKDMLEQSQREEIPFEAISKACIEMREENKIYGEETRLYLPSLYFSEVGIASKILALTERNSKA
EHFSKDEIRKAIGETEEFLNVTYAETQAYAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLSESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKSLHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASQQIPTVELTDVYRQAEGSTIIELAHQIKRGTIPNDLTVKTSDRSFIKASSEQVASVVTQ
VVKSAVTKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGSRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLAGGLQRTDDLQRFTSLRARLNPMEATEEIVEVVEASPTKETLQEGKQVISLKLTVDTMPLIHPMIGM
DGVSPYDFMDEVN

Nucleotide

• Length: 2442 bp

>NTDB_id=373249 FOH38_RS02435 WP_143995544.1 468151..470592(-) (recD2) [Lysinibacillus fusiformis strain 1226]
ATGGCAGAAAATCTAGATTTATTTGAGCTGAATAAGTTTTTTATTCTCGGACGTCCTATCGTCTCGATTTTTCATAATGC
GCAAAATATGTATTCAATTGTCCGTGTGAAAATTCAAGAAACGAACTTACAATATGACGATAAGGAAATTATTGTTGTTG
GCTATTTTCCGCCACTGCAAATGGATGAACAGTATCGATTTACTGGAATCTTGAGACAACATCCAAAATATGGTGTACAA
TTTCAAATTGAGACGTTTGCAAAAGAAGTACCAGCAACGGAGCAGGGGATCGTACATTACTTATCGAGTGACTTATTTGT
TGGAATTGGCAGAAAAACAGCTGAAACAATTGTTGAAAAACTAGGTGCGAATGCATTACGTCTAATTTTAGAGGATCCAA
ACGCACTCGATGTTGTCCCTCGGTTATCTGCGGATAAAAAAGAGGTCATTCATCGGACGATTGAACAAAATCTTGGTTTA
GAACGTGTGATGATTCAGCTCAATGAATGGGGCTTTGGACCACAGCTTGGCATGAAAATTTACCAAACGTATCGTACGGA
AGCCATCGAGTTATTGACAGAAAATCCATATCGTCTTATTGAAGATATTGATGGTGTTGGATTTTTACGTGCGGACGAGC
TTGGTGCAAAATTGGGCATTACCGGCAATCACCCTGACCGTATAAAAGCTGCTATTTTCCATATTCTAAATGCAGCAGCG
CTATCAGATGGCCATGTATATTTAGATGCCGAGCATGTATTACCACAGGTAAAGGACATGCTTGAACAAAGTCAACGCGA
GGAAATTCCTTTTGAAGCCATTTCAAAGGCCTGTATTGAAATGCGTGAGGAAAATAAAATCTATGGCGAAGAAACTAGAC
TTTATTTGCCATCCTTATATTTTTCAGAAGTCGGCATTGCATCGAAAATTTTAGCGTTAACCGAACGGAACAGTAAGGCT
GAACATTTTAGTAAGGATGAAATTCGCAAGGCAATTGGTGAAACTGAAGAGTTTCTAAATGTCACATATGCAGAAACACA
AGCATACGCGATTGAGCAAGCCCTAAACTCAGCAGTCATGATTTTAACAGGTGGACCAGGAACAGGGAAAACAACCGTTG
TACGAGGTGTCGTTGAAGTCTATGCAAAGCTACATGGGCTATCACTAAATCCAAAAGAATATGCACAAAAGGAAGAGCCA
TTCCCCATTATTCTATGTGCACCGACTGGACGGGCAGCGAAGCGTTTATCAGAGTCGACAGAGCTACCTGCAATGACGAT
ACATCGGTTATTAGGTTTTACAGGGCAGGAAAAAGAAGAAGAAACCGAACGCGAAGTGACGGGTAAGCTTATTATTGTTG
ATGAAATGTCAATGGTTGATACATGGCTTGCACATCAATTATTGAAATCATTACATGAGGATGTACAGGTAGTGTTTGTA
GGTGATCAGGATCAACTACCACCAGTAGGTCCAGGACAAGTATTGAAAGATTTACTCGCCTCTCAGCAAATTCCCACGGT
GGAATTAACAGATGTTTATCGCCAGGCAGAAGGCTCAACAATTATCGAACTTGCCCACCAAATAAAACGCGGTACGATAC
CCAATGATTTAACAGTGAAAACATCAGATCGTTCATTTATTAAAGCATCATCAGAACAGGTGGCAAGTGTAGTCACACAG
GTTGTCAAGAGTGCTGTAACAAAAGGGCAAGAAATTCGAAATATTCAAGTACTAGCGCCCATGTATAAAGGACCAGCGGG
AATTGATAACTTAAATAAGATGATCCAAGAGCTCATCAATCCAAATGATACAGGCTCAAGAAAAGAACTTGTCTTTGGTG
ATGTAACGTATCGCATAAAAGATAAAGTGCTTCAGCTTGTCAATCAACCAGAAAGCAACGTCTTTAACGGAGATATGGGC
GAAGTGATTAGTATCATTAAGGCAAAAGAAACGATCGAGAAGCAGGACTTACTCGTAGTTTCTTTCGATGGCATTGAAGT
TACCTATCAACGCAGTGATCTTAATCAATTGACACTTGCCTATTGTTGCTCTATACACAAATCGCAGGGTTCAGAGTTTC
AAACTGTTATTATGCCAGTAGTACGAGGTTATTCAAAAATGTTGCGTCGTAATTTGTTATATACGGGCATTACAAGGGCG
AAAAATTTCTTGATTTTATGTGGGGAACCTGACGTGTTAGCGGGTGGCTTACAGCGTACAGATGATTTACAACGATTTAC
TTCGTTGCGGGCACGACTTAATCCGATGGAAGCAACGGAGGAAATTGTGGAGGTCGTAGAAGCGTCTCCGACTAAGGAAA
CATTGCAGGAAGGGAAGCAAGTAATCTCTCTGAAGCTCACGGTAGACACAATGCCACTTATTCATCCAATGATTGGAATG
GATGGTGTTTCACCGTATGATTTTATGGATGAAGTAAATTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-660)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• AAA domain (AAA_30) (343-550)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.652	97.417	0.513