Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FOH38_RS00765 Genome accession   NZ_CP041696
Coordinates   155017..156708 (-) Length   563 a.a.
NCBI ID   WP_143995247.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 150017..161708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS00745 (FOH38_00745) - 150274..151008 (-) 735 WP_369436168.1 hypothetical protein -
  FOH38_RS00750 (FOH38_00750) - 151681..152652 (-) 972 WP_143995244.1 tyrosine-type recombinase/integrase -
  FOH38_RS00755 (FOH38_00755) spo0A 152791..153582 (-) 792 WP_143995245.1 sporulation transcription factor Spo0A -
  FOH38_RS00760 (FOH38_00760) - 153938..154885 (-) 948 WP_143995246.1 SpoIVB peptidase S55 domain-containing protein -
  FOH38_RS00765 (FOH38_00765) recN 155017..156708 (-) 1692 WP_143995247.1 DNA repair protein RecN Machinery gene
  FOH38_RS00770 (FOH38_00770) argR 156862..157311 (-) 450 WP_010859739.1 transcriptional regulator AhrC/ArgR -
  FOH38_RS00775 (FOH38_00775) - 157412..158230 (-) 819 WP_143995248.1 TlyA family RNA methyltransferase -
  FOH38_RS00780 (FOH38_00780) dxs 158230..160131 (-) 1902 WP_143995249.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FOH38_RS00785 (FOH38_00785) - 160296..161177 (-) 882 WP_143995250.1 polyprenyl synthetase family protein -
  FOH38_RS00790 (FOH38_00790) xseB 161181..161414 (-) 234 WP_143995251.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63318.13 Da        Isoelectric Point: 4.8534

>NTDB_id=373246 FOH38_RS00765 WP_143995247.1 155017..156708(-) (recN) [Lysinibacillus fusiformis strain 1226]
MLRELSIRNFAIIEDLTVSFSDGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSPAHPVYKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDVGASLIDIHGQHENQELMDEKQHIHLLDQFAEEQLTPIQ
NMYSKQYDEYRALKKELASISIDEQLMAQRIDLYQFQMKELEDANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGNAMGALEDAATIDEQFKEASEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNMKRKYGAT
VEDILTYYEKIKTELNELLNRDEILQVKERKVHAMEEVLNDFAAELSNVRKVAAHELSEAIMAELRELHMEKAKFIVNFD
ALPYFDAHGKDQVTFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGVTSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLAEIDTRARIEEVSRMMSGAEITALTLQHATELLNMAKARKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=373246 FOH38_RS00765 WP_143995247.1 155017..156708(-) (recN) [Lysinibacillus fusiformis strain 1226]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATCTAACAGTCAGTTTTTCAGATGGTTTAACGGTGTT
AACGGGGGAAACAGGAGCAGGGAAATCGATTATTATTGATGCAGTGCATTTACTTGCCGGAGGTAGAGGAAATTCAGAAT
TCATTCGCCATGGCGCTAAAAAAGCAGAGTTAGGTGGATTATTCCAAATTTCTAGTCCTGCACACCCTGTATATAAAAAA
TTAGAAGAAGCAGGTATTGAAATAGAAGAAGATACCATCATATTGCGCCGTGATTTAAATGATACAGGAAAAAGTATCTG
TCGTGTGAATGGCAAGCTTGTTCCATTATCTGTATTACGTGATGTAGGTGCGAGTCTTATTGACATTCATGGACAGCATG
AAAACCAAGAATTAATGGATGAAAAACAACATATTCATTTACTCGATCAATTTGCGGAGGAACAGCTTACACCGATTCAA
AATATGTATAGTAAGCAATATGATGAATATCGTGCCTTGAAAAAAGAATTGGCATCAATTTCTATTGATGAGCAGTTAAT
GGCACAACGTATTGATTTATACCAGTTTCAAATGAAAGAGCTGGAGGATGCAAATTTAAAGTTGGGTGAGGAAGACGAGC
TTCTAGATGAGCGTCGTCGTCTGATGAATTTCAATAAAATTTTTGAACGATCTAGTGCAGCCTATGAAGCCATCCAAGGT
GAAACCAAAGGCCTGGATTGGATTGGCAATGCAATGGGCGCATTAGAGGATGCAGCAACGATTGATGAACAATTCAAAGA
GGCTTCTGAAGCTGTTACAACTGCATTTTATGCTTTGCAGGATGCAGCCTATCAGGTGAAAAATGTACTAGATGAGCTAG
AATTTGACCCAGCCCGATTAAACGAGGTGGAGCAACGACTTGCACTTTTACAAAACATGAAGCGCAAATATGGGGCAACT
GTTGAAGATATTTTAACCTATTATGAAAAAATTAAAACAGAGTTAAACGAGTTATTAAATCGTGACGAAATTTTACAGGT
GAAAGAACGGAAAGTTCATGCAATGGAAGAAGTTTTAAATGATTTTGCAGCTGAACTTTCTAATGTACGTAAAGTAGCTG
CACATGAATTAAGTGAAGCGATTATGGCTGAGCTGCGTGAATTACATATGGAAAAAGCAAAGTTTATCGTGAATTTTGAT
GCATTACCTTATTTTGATGCACATGGTAAAGATCAAGTCACTTTTTATATTTCAACGAATGTGGGCGAGCCCCCGAAATC
TTTACCGAAAATCGCCTCTGGTGGAGAATTATCACGAATGATGCTAGCGTTAAAAACTATTTTCTCTTCTTCAAATGGTG
TAACGTCCATTATTTTTGATGAGGTTGATACAGGTGTGAGTGGTCGAGTGGCACAAGCAATTGCTGAAAAAATTGCCGCA
ATCTCTATTAATTCCCAAGTTTTATGTATTTCACATTTACCGCAAGTGGCTGCAATGGCAGATCATCATTATTTTATAAA
AAAAGAAGTCGAGCATGATCGTACGTTTACGTCATTGGCAGAAATAGATACACGTGCTCGTATTGAAGAAGTGAGTCGCA
TGATGTCAGGTGCAGAAATTACAGCCTTAACTTTACAGCATGCAACAGAGCTATTAAATATGGCGAAAGCGCGAAAAAAA
CAAATGCGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.456

100

0.531

Multiple sequence alignment