Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   FOG69_RS20850 Genome accession   NZ_CP041693
Coordinates   238497..238661 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain H     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 233497..243661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG69_RS20845 srfAB 235388..238480 (+) 3093 Protein_224 surfactin non-ribosomal peptide synthetase SrfAB -
  FOG69_RS20850 comS 238497..238661 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=373230 FOG69_RS20850 WP_269387144.1 238497..238661(+) (comS) [Bacillus amyloliquefaciens strain H]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=373230 FOG69_RS20850 WP_269387144.1 238497..238661(+) (comS) [Bacillus amyloliquefaciens strain H]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519

Multiple sequence alignment