Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | FOG69_RS20245 | Genome accession | NZ_CP041693 |
| Coordinates | 3898173..3898463 (-) | Length | 96 a.a. |
| NCBI ID | WP_186434521.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain H | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3893173..3903463
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOG69_RS20205 (FOG69_20205) | darA | 3893190..3893519 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| FOG69_RS20210 (FOG69_20210) | - | 3893532..3893972 (+) | 441 | WP_013350745.1 | YaaR family protein | - |
| FOG69_RS20215 (FOG69_20215) | holB | 3893984..3894973 (+) | 990 | WP_013350746.1 | DNA polymerase III subunit delta' | - |
| FOG69_RS20220 (FOG69_20220) | ricT | 3894976..3895803 (+) | 828 | WP_013350747.1 | competence/sporulation regulator complex protein RicT | - |
| FOG69_RS20225 (FOG69_20225) | yabA | 3895818..3896177 (+) | 360 | WP_013350748.1 | replication initiation-control protein YabA | - |
| FOG69_RS20230 (FOG69_20230) | - | 3896238..3896981 (+) | 744 | WP_013350749.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| FOG69_RS20235 (FOG69_20235) | - | 3896968..3897267 (+) | 300 | WP_013350750.1 | GIY-YIG nuclease family protein | - |
| FOG69_RS20240 (FOG69_20240) | rsmI | 3897242..3898123 (+) | 882 | WP_013350751.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| FOG69_RS20245 (FOG69_20245) | abrB | 3898173..3898463 (-) | 291 | WP_186434521.1 | transition state genes transcriptional regulator AbrB | Regulator |
| FOG69_RS20250 (FOG69_20250) | metG | 3898946..3900937 (+) | 1992 | WP_014469597.1 | methionine--tRNA ligase | - |
| FOG69_RS20255 (FOG69_20255) | - | 3901014..3901781 (+) | 768 | WP_014469598.1 | TatD family hydrolase | - |
| FOG69_RS20260 (FOG69_20260) | - | 3901916..3903235 (+) | 1320 | WP_014471348.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10727.49 Da Isoelectric Point: 6.3482
>NTDB_id=373229 FOG69_RS20245 WP_186434521.1 3898173..3898463(-) (abrB) [Bacillus amyloliquefaciens strain H]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKISLKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKISLKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=373229 FOG69_RS20245 WP_186434521.1 3898173..3898463(-) (abrB) [Bacillus amyloliquefaciens strain H]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCAGCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCAGCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
96.875 |
100 |
0.969 |