Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   G6Z99_RS23780 Genome accession   NZ_CP049201
Coordinates   4922412..4923017 (+) Length   201 a.a.
NCBI ID   WP_164476129.1    Uniprot ID   -
Organism   Escherichia coli strain PapRG-04-4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4917412..4928017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6Z99_RS27740 - 4917966..4918064 (+) 99 Protein_4711 hypothetical protein -
  G6Z99_RS23750 (G6Z99_23740) rsmS 4918117..4918278 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  G6Z99_RS23755 (G6Z99_23745) priC 4918292..4918819 (-) 528 WP_000844879.1 primosomal replication protein N'' -
  G6Z99_RS23760 (G6Z99_23750) ybaN 4918889..4919266 (+) 378 WP_001188905.1 DUF454 family protein -
  G6Z99_RS23765 (G6Z99_23755) apt 4919419..4919970 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  G6Z99_RS23770 (G6Z99_23760) dnaX 4920099..4922030 (+) 1932 WP_164476128.1 DNA polymerase III subunit gamma/tau -
  G6Z99_RS23775 (G6Z99_23765) ybaB 4922083..4922412 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  G6Z99_RS23780 (G6Z99_23770) recR 4922412..4923017 (+) 606 WP_164476129.1 recombination mediator RecR Machinery gene
  G6Z99_RS23785 (G6Z99_23775) htpG 4923127..4925001 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  G6Z99_RS23790 (G6Z99_23780) adk 4925182..4925826 (+) 645 WP_001220233.1 adenylate kinase -
  G6Z99_RS23795 (G6Z99_23785) hemH 4925958..4926920 (+) 963 WP_001250105.1 ferrochelatase -
  G6Z99_RS23800 (G6Z99_23790) aes 4926917..4927876 (-) 960 WP_000801812.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21948.03 Da        Isoelectric Point: 4.9097

>NTDB_id=373224 G6Z99_RS23780 WP_164476129.1 4922412..4923017(+) (recR) [Escherichia coli strain PapRG-04-4]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GLICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=373224 G6Z99_RS23780 WP_164476129.1 4922412..4923017(+) (recR) [Escherichia coli strain PapRG-04-4]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTGGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCTAATCTGTGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443