Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FOG69_RS15110 Genome accession   NZ_CP041693
Coordinates   2908249..2908893 (-) Length   214 a.a.
NCBI ID   WP_014470899.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain H     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903249..2913893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG69_RS15075 (FOG69_15075) - 2904434..2904865 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  FOG69_RS15080 (FOG69_15080) - 2904865..2905206 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  FOG69_RS15085 (FOG69_15085) - 2905199..2906680 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  FOG69_RS15090 (FOG69_15090) - 2906686..2907162 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  FOG69_RS15095 (FOG69_15095) - 2907162..2907446 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  FOG69_RS15100 (FOG69_15100) mnhG 2907430..2907804 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  FOG69_RS15105 (FOG69_15105) - 2907844..2908227 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  FOG69_RS15110 (FOG69_15110) comA 2908249..2908893 (-) 645 WP_014470899.1 response regulator transcription factor Regulator
  FOG69_RS15115 (FOG69_15115) comP 2908974..2911280 (-) 2307 WP_013353395.1 sensor histidine kinase Regulator
  FOG69_RS15120 (FOG69_15120) comX 2911303..2911479 (-) 177 WP_013353396.1 competence pheromone ComX -
  FOG69_RS15125 (FOG69_15125) - 2911498..2912373 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  FOG69_RS15130 (FOG69_15130) degQ 2912525..2912665 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  FOG69_RS15140 (FOG69_15140) - 2913126..2913467 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24266.65 Da        Isoelectric Point: 4.9953

>NTDB_id=373210 FOG69_RS15110 WP_014470899.1 2908249..2908893(-) (comA) [Bacillus amyloliquefaciens strain H]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKNESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=373210 FOG69_RS15110 WP_014470899.1 2908249..2908893(-) (comA) [Bacillus amyloliquefaciens strain H]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAA
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment