Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FOG69_RS06950 Genome accession   NZ_CP041693
Coordinates   1328387..1328671 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus amyloliquefaciens strain H     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323387..1333671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOG69_RS06925 (FOG69_06925) - 1324634..1325542 (+) 909 WP_013352105.1 ketopantoate reductase family protein -
  FOG69_RS06930 (FOG69_06930) - 1325573..1326805 (-) 1233 WP_013352106.1 aminopeptidase -
  FOG69_RS06935 (FOG69_06935) - 1326906..1327040 (-) 135 WP_013352107.1 protein YkpC -
  FOG69_RS06940 (FOG69_06940) mreBH 1327111..1328118 (-) 1008 WP_013352108.1 cell shape-determining protein MreBH -
  FOG69_RS06950 (FOG69_06950) abrB 1328387..1328671 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FOG69_RS06955 (FOG69_06955) - 1328844..1330148 (+) 1305 WP_013352110.1 ATP-binding protein -
  FOG69_RS06960 (FOG69_06960) - 1330150..1330977 (+) 828 WP_013352111.1 gamma-glutamylcyclotransferase -
  FOG69_RS06965 (FOG69_06965) ktrC 1331018..1331683 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  FOG69_RS06970 (FOG69_06970) ade 1331833..1333566 (+) 1734 WP_013352112.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=373181 FOG69_RS06950 WP_013352109.1 1328387..1328671(+) (abrB) [Bacillus amyloliquefaciens strain H]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=373181 FOG69_RS06950 WP_013352109.1 1328387..1328671(+) (abrB) [Bacillus amyloliquefaciens strain H]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAACTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCTGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCATTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment