Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   FGF55_RS20455 Genome accession   NZ_CP041691
Coordinates   348374..348538 (+) Length   54 a.a.
NCBI ID   WP_269194677.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 343374..353538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS20450 srfAB 345265..348357 (+) 3093 Protein_311 surfactin non-ribosomal peptide synthetase SrfAB -
  FGF55_RS20455 comS 348374..348538 (+) 165 WP_269194677.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6211.19 Da        Isoelectric Point: 11.7559

>NTDB_id=373148 FGF55_RS20455 WP_269194677.1 348374..348538(+) (comS) [Bacillus amyloliquefaciens strain ZJU1]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=373148 FGF55_RS20455 WP_269194677.1 348374..348538(+) (comS) [Bacillus amyloliquefaciens strain ZJU1]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5

Multiple sequence alignment