Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | FGF55_RS18360 | Genome accession | NZ_CP041691 |
| Coordinates | 3697506..3698651 (+) | Length | 381 a.a. |
| NCBI ID | WP_014419129.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain ZJU1 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3692506..3703651
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGF55_RS18340 (FGF55_18340) | - | 3692980..3693696 (-) | 717 | WP_014419126.1 | Crp/Fnr family transcriptional regulator | - |
| FGF55_RS18345 (FGF55_18345) | narK | 3693794..3694984 (-) | 1191 | WP_007407632.1 | nitrate transporter NarK | - |
| FGF55_RS18350 (FGF55_18350) | argS | 3695119..3696789 (-) | 1671 | WP_014419127.1 | arginine--tRNA ligase | - |
| FGF55_RS18355 (FGF55_18355) | - | 3696786..3697214 (-) | 429 | WP_014419128.1 | DUF1934 family protein | - |
| FGF55_RS18360 (FGF55_18360) | rapF | 3697506..3698651 (+) | 1146 | WP_014419129.1 | tetratricopeptide repeat protein | Regulator |
| FGF55_RS18365 (FGF55_18365) | - | 3698635..3698754 (+) | 120 | WP_021494790.1 | PhrC/PhrF family phosphatase-inhibitory pheromone | - |
| FGF55_RS18370 (FGF55_18370) | - | 3698952..3699155 (+) | 204 | WP_003151064.1 | helix-turn-helix transcriptional regulator | - |
| FGF55_RS18375 (FGF55_18375) | - | 3699169..3699372 (+) | 204 | WP_007407641.1 | hypothetical protein | - |
| FGF55_RS18380 (FGF55_18380) | - | 3699407..3699592 (+) | 186 | WP_014419130.1 | DUF4177 domain-containing protein | - |
| FGF55_RS18385 (FGF55_18385) | - | 3699779..3700060 (+) | 282 | WP_014419131.1 | hypothetical protein | - |
| FGF55_RS18390 (FGF55_18390) | - | 3700104..3700616 (+) | 513 | WP_014419132.1 | stage II sporulation protein M | - |
| FGF55_RS18400 (FGF55_18400) | - | 3701207..3701425 (-) | 219 | WP_003151056.1 | LuxR C-terminal-related transcriptional regulator | - |
| FGF55_RS18405 (FGF55_18405) | speB | 3701594..3702466 (-) | 873 | WP_007614448.1 | agmatinase | - |
| FGF55_RS18410 (FGF55_18410) | speE | 3702525..3703355 (-) | 831 | WP_003151052.1 | spermidine synthase | - |
Sequence
Protein
Download Length: 381 a.a. Molecular weight: 45581.65 Da Isoelectric Point: 4.5797
>NTDB_id=373144 FGF55_RS18360 WP_014419129.1 3697506..3698651(+) (rapF) [Bacillus amyloliquefaciens strain ZJU1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV
Nucleotide
Download Length: 1146 bp
>NTDB_id=373144 FGF55_RS18360 WP_014419129.1 3697506..3698651(+) (rapF) [Bacillus amyloliquefaciens strain ZJU1]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCAAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCAAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
78.215 |
100 |
0.782 |
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
57.105 |
99.738 |
0.57 |