Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FGF55_RS11080 Genome accession   NZ_CP041691
Coordinates   2247232..2247840 (+) Length   202 a.a.
NCBI ID   WP_014418235.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242232..2252840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS11040 (FGF55_11040) - 2243252..2243758 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  FGF55_RS11045 (FGF55_11045) - 2243897..2244310 (+) 414 WP_007612169.1 hypothetical protein -
  FGF55_RS11050 (FGF55_11050) - 2244340..2244807 (-) 468 WP_014418231.1 YppG family protein -
  FGF55_RS11055 (FGF55_11055) - 2244994..2245176 (+) 183 WP_003153532.1 YppF family protein -
  FGF55_RS11060 (FGF55_11060) - 2245215..2245583 (-) 369 WP_014418232.1 YppE family protein -
  FGF55_RS11065 (FGF55_11065) - 2245629..2245874 (-) 246 WP_014418233.1 DUF5446 family protein -
  FGF55_RS11070 (FGF55_11070) sspM 2246080..2246184 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  FGF55_RS11075 (FGF55_11075) - 2246228..2247190 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  FGF55_RS11080 (FGF55_11080) recU 2247232..2247840 (+) 609 WP_014418235.1 Holliday junction resolvase RecU Machinery gene
  FGF55_RS11085 (FGF55_11085) - 2247879..2250662 (+) 2784 WP_032863588.1 PBP1A family penicillin-binding protein -
  FGF55_RS11090 (FGF55_11090) - 2250740..2251231 (-) 492 WP_012117839.1 YpoC family protein -
  FGF55_RS11095 (FGF55_11095) nth 2251228..2251887 (-) 660 WP_007612187.1 endonuclease III -
  FGF55_RS11100 (FGF55_11100) dnaD 2251906..2252604 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=373109 FGF55_RS11080 WP_014418235.1 2247232..2247840(+) (recU) [Bacillus amyloliquefaciens strain ZJU1]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=373109 FGF55_RS11080 WP_014418235.1 2247232..2247840(+) (recU) [Bacillus amyloliquefaciens strain ZJU1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

91.457

98.515

0.901

Multiple sequence alignment