Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   FGF55_RS07455 Genome accession   NZ_CP041691
Coordinates   1412850..1413314 (-) Length   154 a.a.
NCBI ID   WP_014417605.1    Uniprot ID   I2C4C5
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407850..1418314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS07435 (FGF55_07435) - 1408331..1410151 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  FGF55_RS07440 (FGF55_07440) - 1410176..1411345 (-) 1170 WP_007611083.1 aminotransferase A -
  FGF55_RS20310 - 1411546..1411707 (-) 162 WP_007409608.1 hypothetical protein -
  FGF55_RS07450 (FGF55_07450) cheV 1411896..1412807 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  FGF55_RS07455 (FGF55_07455) kre 1412850..1413314 (-) 465 WP_014417605.1 YkyB family protein Regulator
  FGF55_RS07460 (FGF55_07460) - 1413437..1414729 (-) 1293 WP_014417606.1 MFS transporter -
  FGF55_RS07465 (FGF55_07465) - 1414805..1415299 (-) 495 WP_088056573.1 L,D-transpeptidase family protein -
  FGF55_RS07470 (FGF55_07470) - 1415374..1416237 (-) 864 WP_014417608.1 metallophosphoesterase -
  FGF55_RS07475 (FGF55_07475) fadH 1416381..1417145 (+) 765 WP_014417609.1 2,4-dienoyl-CoA reductase -
  FGF55_RS07480 (FGF55_07480) - 1417259..1417807 (+) 549 WP_014417610.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17812.60 Da        Isoelectric Point: 10.5497

>NTDB_id=373102 FGF55_RS07455 WP_014417605.1 1412850..1413314(-) (kre) [Bacillus amyloliquefaciens strain ZJU1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFRHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=373102 FGF55_RS07455 WP_014417605.1 1412850..1413314(-) (kre) [Bacillus amyloliquefaciens strain ZJU1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCGGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTAACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4C5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment