Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BMB171_RS20745 Genome accession   NC_014171
Coordinates   4055203..4055997 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis BMB171     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4050203..4060997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMB171_RS20720 (BMB171_C3827) - 4050725..4052797 (-) 2073 WP_013142153.1 sigma-54-dependent Fis family transcriptional regulator -
  BMB171_RS20725 (BMB171_C3828) - 4052935..4053168 (+) 234 WP_001190211.1 DUF2627 domain-containing protein -
  BMB171_RS20730 (BMB171_C3829) - 4053218..4053946 (-) 729 WP_000172575.1 glycerophosphodiester phosphodiesterase -
  BMB171_RS20735 (BMB171_C3830) - 4053997..4054143 (+) 147 WP_001247671.1 YycC family protein -
  BMB171_RS20740 (BMB171_C3831) - 4054386..4054949 (-) 564 WP_000428231.1 PRK06770 family protein -
  BMB171_RS20745 (BMB171_C3832) spo0A 4055203..4055997 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  BMB171_RS20755 (BMB171_C3833) spoIVB 4056288..4057586 (-) 1299 WP_025921795.1 SpoIVB peptidase -
  BMB171_RS20760 (BMB171_C3834) recN 4057705..4059443 (-) 1739 Protein_4040 DNA repair protein RecN -
  BMB171_RS20765 (BMB171_C3835) argR 4059708..4060157 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=37310 BMB171_RS20745 WP_011110369.1 4055203..4055997(-) (spo0A) [Bacillus thuringiensis BMB171]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=37310 BMB171_RS20745 WP_011110369.1 4055203..4055997(-) (spo0A) [Bacillus thuringiensis BMB171]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GCCACGCGATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment