Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FGF55_RS01765 Genome accession   NZ_CP041691
Coordinates   331346..331783 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZJU1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326346..336783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGF55_RS01740 (FGF55_01740) - 327368..328504 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  FGF55_RS01745 (FGF55_01745) - 328519..328953 (+) 435 WP_014416871.1 RDD family protein -
  FGF55_RS01750 (FGF55_01750) - 329025..329348 (+) 324 WP_007409357.1 YckD family protein -
  FGF55_RS01755 (FGF55_01755) - 329450..330886 (+) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  FGF55_RS01760 (FGF55_01760) nin/comJ 330927..331325 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  FGF55_RS01765 (FGF55_01765) nucA/comI 331346..331783 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FGF55_RS01770 (FGF55_01770) hxlB 332114..332671 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  FGF55_RS01775 (FGF55_01775) hxlA 332668..333303 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  FGF55_RS01780 (FGF55_01780) - 333535..333897 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=373081 FGF55_RS01765 WP_003156588.1 331346..331783(-) (nucA/comI) [Bacillus amyloliquefaciens strain ZJU1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=373081 FGF55_RS01765 WP_003156588.1 331346..331783(-) (nucA/comI) [Bacillus amyloliquefaciens strain ZJU1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment