Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FNJ88_RS04915 Genome accession   NZ_CP041687
Coordinates   1027793..1029139 (-) Length   448 a.a.
NCBI ID   WP_143852111.1    Uniprot ID   A0A516P199
Organism   Chryseobacterium sp. SNU WT5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1022793..1034139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNJ88_RS04890 (FNJ88_04890) - 1022803..1025172 (-) 2370 WP_143852106.1 M1 family metallopeptidase -
  FNJ88_RS04895 (FNJ88_04895) - 1025392..1025964 (-) 573 WP_143852107.1 HupE/UreJ family protein -
  FNJ88_RS04900 (FNJ88_04900) - 1026019..1026522 (+) 504 WP_143852108.1 DUF6702 family protein -
  FNJ88_RS04905 (FNJ88_04905) - 1026519..1027091 (-) 573 WP_143852109.1 ACP phosphodiesterase -
  FNJ88_RS04910 (FNJ88_04910) - 1027155..1027733 (-) 579 WP_143852110.1 transposase -
  FNJ88_RS04915 (FNJ88_04915) radA 1027793..1029139 (-) 1347 WP_143852111.1 DNA repair protein RadA Machinery gene
  FNJ88_RS04920 (FNJ88_04920) - 1029487..1030128 (-) 642 WP_143852112.1 hypothetical protein -
  FNJ88_RS04925 (FNJ88_04925) - 1030344..1032038 (-) 1695 WP_143852113.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  FNJ88_RS04930 (FNJ88_04930) - 1032035..1033099 (-) 1065 WP_262711474.1 phosphatase PAP2 family protein -
  FNJ88_RS14495 - 1033137..1033271 (+) 135 WP_262711481.1 hypothetical protein -
  FNJ88_RS04935 (FNJ88_04935) - 1033327..1034082 (-) 756 WP_143852115.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49552.21 Da        Isoelectric Point: 6.4014

>NTDB_id=373046 FNJ88_RS04915 WP_143852111.1 1027793..1029139(-) (radA) [Chryseobacterium sp. SNU WT5]
MAKVKTAYICQNCGTNYPQWLGQCKNCGEWNTLVEEIVEKSTTKSFTDRSKQHIINIIEVETFEEPRIISPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHEAKKLK
PDFLIVDSIQTLQSQTIESSPGTVSQIRECSNEIIKYAKDTNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRASKNRFGSTAEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLIEIQALVSTAVYGTPQRSC
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTGDPALDLAVVASILSSNEDVAISEHFCFAGEIGLSGEIRPIP
QIEQRISEAEKLGYEKIFVSNLNKIPKKKYGIVIVEVSKIEDFHECLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=373046 FNJ88_RS04915 WP_143852111.1 1027793..1029139(-) (radA) [Chryseobacterium sp. SNU WT5]
ATGGCAAAAGTGAAAACAGCATATATCTGTCAGAATTGTGGAACCAATTATCCCCAGTGGCTCGGGCAGTGTAAAAATTG
CGGGGAGTGGAATACTTTGGTGGAAGAAATTGTAGAGAAATCTACAACCAAAAGTTTTACCGATCGCTCAAAACAGCATA
TCATCAATATTATTGAAGTGGAAACTTTTGAAGAACCGAGAATTATAAGTCCTTCTGAAGAATTGAATCGGGTGCTGGGT
GGAGGAATCGTGTTGGGTTCTGTCACTTTAATTGGTGGCGAACCAGGAATTGGAAAGTCGACATTGTTGTTGCAACTGGC
TTTAAAAATGAAGAAGAAGATTCTCTATGTTTCTGGGGAGGAAAGTGCATCGCAGATAAAAATGCGTGCAGACCGGTTAA
CAGAACTTCAAAATCCAAACTGTTTTCTTTTTACAGAAACTTCCGTAGAGAAGATTCTACACGAAGCTAAAAAATTGAAA
CCTGATTTTTTAATTGTTGATTCTATTCAAACGCTTCAAAGTCAGACGATCGAGAGTTCTCCGGGAACGGTTTCTCAGAT
TAGAGAATGTTCTAATGAAATTATTAAATACGCGAAAGATACCAATACGCCGGTTTTTTTGGTTGGTCATATCACCAAAG
ACGGTCAGATCGCAGGACCAAAAGTTTTGGAACACATGGTCGATGTTGTTTTAAATTTTGATGGAGACCGAAATCATTTG
TTTAGATTATTGCGAGCGAGTAAAAACCGTTTCGGTTCTACGGCCGAAATCGGGATCTACGAAATGGTTTCGCAAGGTTT
GAAGGAGATAAAAAATCCTTCCGAAATATTAATTACCAAGAAATTCGAAGAGCTTTCCGGAAATTCTGTGGCTGTAACTT
TAGAAGGAAACCGTCCTATGCTAATTGAAATTCAAGCTTTAGTAAGTACGGCGGTTTATGGAACGCCGCAAAGAAGCTGC
ACAGGTTTTGACTCGAAACGACTGAATATGTTGCTAGCAGTTTTAGAGAAAAGAGCCGGTTTTCAGTTAGGTGCGAAAGA
TGTTTTCCTGAATATAACAGGCGGAATAAAAACGGGAGATCCTGCTTTGGATCTGGCGGTGGTGGCGTCAATTCTTTCGT
CGAATGAAGATGTTGCGATTTCTGAACATTTCTGTTTTGCTGGGGAAATAGGATTAAGCGGAGAAATTCGCCCGATTCCG
CAGATTGAGCAAAGAATTTCTGAAGCAGAGAAATTAGGATACGAGAAAATATTTGTTTCAAACCTCAATAAAATCCCAAA
GAAAAAATACGGAATCGTCATCGTGGAAGTAAGCAAGATCGAGGATTTTCATGAGTGTTTGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-216)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516P199

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

48.026

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.487
  radA Streptococcus pneumoniae D39

49.764

94.643

0.471
  radA Streptococcus pneumoniae TIGR4

49.764

94.643

0.471
  radA Streptococcus mitis SK321

49.764

94.643

0.471
  radA Streptococcus pneumoniae R6

49.764

94.643

0.471
  radA Streptococcus pneumoniae Rx1

49.764

94.643

0.471

Multiple sequence alignment