Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   VV7356_RS21745 Genome accession   NZ_CP041683
Coordinates   4830403..4831410 (+) Length   335 a.a.
NCBI ID   WP_011079334.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4823806..4830351 4830403..4831410 flank 52


Gene organization within MGE regions


Location: 4823806..4831410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS21720 (VV7356_22305) - 4823806..4824837 (-) 1032 WP_103195755.1 IS630 family transposase -
  VV7356_RS21725 (VV7356_22310) repA 4825479..4826447 (+) 969 WP_103270986.1 plasmid replication initiator RepA -
  VV7356_RS21730 (VV7356_22315) - 4827111..4827356 (+) 246 WP_000351061.1 pyocin activator PrtN family protein -
  VV7356_RS21735 (VV7356_22330) - 4828558..4829127 (-) 570 WP_017788929.1 competence protein CoiA family protein -
  VV7356_RS21740 (VV7356_22335) - 4829319..4830351 (+) 1033 Protein_4237 IS630 family transposase -
  VV7356_RS21745 (VV7356_22340) cytR 4830403..4831410 (+) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36842.38 Da        Isoelectric Point: 6.4904

>NTDB_id=373037 VV7356_RS21745 WP_011079334.1 4830403..4831410(+) (cytR) [Vibrio vulnificus strain 7356]
MATMKDVAQLAGVSTATVSRALMNPDKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESRTIVAIVPDICDPYYTEIIRG
IEDAAIEQGYLVLLGDSGQQKRRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPDLELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPKSAALCQFRQQGYQQALRRAGITMNPQYCVESEFSFEGGAKAIRHLLEMNDAPTA
VFCHCDTMAIGAIQEAKKLGFRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDIHSGSRLLE
TKLVVRGSAAPPGLR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=373037 VV7356_RS21745 WP_011079334.1 4830403..4831410(+) (cytR) [Vibrio vulnificus strain 7356]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGAGTTTCAACGGCAACGGTTTCGAGAGCGCTGATGAATCCAGACAA
AGTATCCGCCACAACGCGTAAGCGTGTGGAAGATGCAGTGTTGGAAGCTGGTTATTCCCCAAACTCGCTGGCACGCAATT
TACGCCGCAACGAGTCACGCACTATCGTCGCGATCGTTCCTGACATTTGTGATCCTTACTACACAGAGATCATTCGTGGC
ATTGAAGATGCCGCCATTGAACAGGGATATTTGGTTCTACTCGGTGACAGCGGCCAACAAAAGCGCCGTGAAAGCTCACT
CGTCAATCTCGTTTTTACCAAGCAAGCGGATGGTATGCTGTTGCTCGGTACCGACTTACCGTTTGATGTGAGCAAGCCAG
AACAGAAAAATCTTCCTCCGATGGTCATGGCTTGCGAGTTCGCCCCCGATCTCGAACTGCCGACGGTTCATATCGATAAC
TTGACCTCAGCATTTGAAGCGGTGAACTACCTGACCCAATTGGGCCACAAACGCATCGCCCAAATTTCAGGGCCAAAATC
CGCAGCACTTTGTCAGTTTAGACAACAAGGCTATCAACAAGCTTTGCGCCGTGCAGGCATCACAATGAACCCACAATACT
GTGTTGAGTCTGAGTTCTCTTTTGAAGGTGGGGCGAAAGCGATCCGTCATCTGCTAGAAATGAATGACGCGCCAACCGCC
GTTTTCTGCCATTGTGACACCATGGCTATCGGGGCGATTCAAGAAGCGAAAAAATTGGGCTTCCGAGTACCGCAAGATCT
GTCGATTGTCGGCTTCGATGACATTCAGTTTGCCCAATATTGCGATCCTCCACTAACCACCATCTCACAGCCACGCTATG
AGATTGGTCGTCAAGCGATGCTGATGATGTTAGAGCTGCTGAAAGGACATGACATTCACAGTGGCTCACGCTTACTTGAA
ACCAAATTGGTGGTTCGTGGTAGCGCAGCGCCTCCAGGCTTGCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

89.759

99.104

0.89
  cytR Vibrio cholerae C6706

88.253

99.104

0.875

Multiple sequence alignment